9IS6 | pdb_00009is6

CryoEM structure of Plant-Complex-C-5b


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth D]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
F [auth C]PF22788COP9 signalosome complex subunit 3, N-terminal helical repeats (COP9_hel_rpt)COP9 signalosome complex subunit 3, N-terminal helical repeats- Repeat
F [auth C]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
PF18323Cop9 signalosome subunit 5 C-terminal domain (CSN5_C)Cop9 signalosome subunit 5 C-terminal domainThe COP9 (Constitutive photomorphogenesis 9) signalosome (CSN), a large multiprotein complex that resembles the 19S lid of the 26S proteasome, plays a central role in the regulation of the E3-cullin RING ubiquitin ligases (CRLs) [1]. The catalytic ac ...The COP9 (Constitutive photomorphogenesis 9) signalosome (CSN), a large multiprotein complex that resembles the 19S lid of the 26S proteasome, plays a central role in the regulation of the E3-cullin RING ubiquitin ligases (CRLs) [1]. The catalytic activity of the CSN complex is carried by subunit 5 (CSN5), also known as c-Jun activation domain-binding protein-1 (Jab1) [1]. This entry is the C-terminal domain found in CSN5 proteins. CSN5, whose two C-terminal helices form an antiparallel hairpin, inserts its final C-terminal helix (helix II) into the central CSN6 framework at the core of the bundle. Deletion of the C-terminal helices has a pronounced effect on CSN integrity [2].
Domain
PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin proteaseProteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or J ...Proteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or JAMM domain [7]. These are metalloenzymes that function as the ubiquitin isopeptidase/ deubiquitinase in the ubiquitin-based signalling and protein turnover pathways in eukaryotes [7]. Versions of the domain in prokaryotic cognates of the ubiquitin-modification pathway are shown to have a similar role, and the archaeal protein from Haloferax volcanii is found to cleave ubiquitin-like small archaeal modifier proteins (SAMP1/2) from protein conjugates [8,9].
Domain
D [auth F]PF13012Maintenance of mitochondrial structure and function (MitMem_reg)Maintenance of mitochondrial structure and function- Family
D [auth F]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin proteaseProteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or J ...Proteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or JAMM domain [7]. These are metalloenzymes that function as the ubiquitin isopeptidase/ deubiquitinase in the ubiquitin-based signalling and protein turnover pathways in eukaryotes [7]. Versions of the domain in prokaryotic cognates of the ubiquitin-modification pathway are shown to have a similar role, and the archaeal protein from Haloferax volcanii is found to cleave ubiquitin-like small archaeal modifier proteins (SAMP1/2) from protein conjugates [8,9].
Domain
C [auth G]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
B [auth H]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
PF21151COP9 signalosome complex subunit 1, C-terminal helix (CSN1_C)COP9 signalosome complex subunit 1, C-terminal helixThis is the C-terminal helix from COP9 signalosome complex subunit 1, an essential component of the COP9 signalosome complex (CSN), which involved in various cellular and developmental processes [1,2]. Domain
PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth B]COP9 signalosome complex subunit 2-
G [auth D]COP9 signalosome complex subunit 4-
F [auth C]COP9 signalosome complex subunit 3-
COP9 signalosome complex subunit 5b
D [auth F]COP9 signalosome complex subunit 6b
C [auth G]COP9 signalosome complex subunit 7-
B [auth H]COP9 signalosome complex subunit 8
COP9 signalosome complex subunit 1-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth B]IPR05087126S Proteasome and COP9 Signalosome ComponentsFamily
H [auth B]IPR000717Proteasome component (PCI) domainDomain
H [auth B]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
G [auth D]IPR000717Proteasome component (PCI) domainDomain
G [auth D]IPR04013426S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4Family
G [auth D]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
G [auth D]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
G [auth D]IPR054559PSMD12/CSN4-like, N-terminalDomain
F [auth C]IPR000717Proteasome component (PCI) domainDomain
F [auth C]IPR050756COP9 signalosome complex subunit 3Family
F [auth C]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
F [auth C]IPR055089COP9 signalosome complex subunit 3, N-terminal helical repeatsDomain
IPR040961Cop9 signalosome subunit 5 C-terminal domainDomain
IPR050242JAMM/MPN+ metalloenzymes, peptidase M67AFamily
IPR037518MPN domainDomain
IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
D [auth F]IPR024969EIF3F/CSN6-like, C-terminalDomain
D [auth F]IPR037518MPN domainDomain
D [auth F]IPR033859COP9 signalosome subunit 6Family
D [auth F]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
C [auth G]IPR045237Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7Family
C [auth G]IPR000717Proteasome component (PCI) domainDomain
B [auth H]IPR000717Proteasome component (PCI) domainDomain
B [auth H]IPR033205COP9 signalosome, subunit CSN8Family
B [auth H]IPR033464CSN8/PSMD8/EIF3KDomain
IPR048624COP9 signalosome complex subunit 1, C-terminal helixDomain
IPR01958526S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1Family
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR000717Proteasome component (PCI) domainDomain
IPR04513526S proteasome regulatory subunit Rpn7, N-terminalDomain