9IOX | pdb_00009iox

Cryo-EM structure of a TEF30-associated intermediate PSII core dimer complex, type II, from Chlamydomonas reinhardtii

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Y [auth i]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8094000 3001590 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8094000 3001590 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8094651 3001547 SCOP2B (2022-06-29)
X [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8094651 3001547 SCOP2B (2022-06-29)
V [auth f]SCOP2B SuperfamilyCytochrome b559 subunits 8093904 3001602 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCytochrome b559 subunits 8093904 3001602 SCOP2B (2022-06-29)
U [auth e]SCOP2B SuperfamilyCytochrome b559 subunits 8094631 3001602 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCytochrome b559 subunits 8094631 3001602 SCOP2B (2022-06-29)
T [auth d]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8094383 3000736 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8094383 3000736 SCOP2B (2022-06-29)
S [auth c]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8094477 3001674 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPhotosystem II antenna protein-like 8094477 3001674 SCOP2B (2022-06-29)
R [auth b]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8094573 3001674 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem II antenna protein-like 8094573 3001674 SCOP2B (2022-06-29)
P [auth Z]SCOP2B SuperfamilyPsbZ-like 8094160 3001624 SCOP2B (2022-06-29)
FA [auth z]SCOP2B SuperfamilyPsbZ-like 8094160 3001624 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8094509 3001523 SCOP2B (2022-06-29)
AA [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8094509 3001523 SCOP2B (2022-06-29)
Z [auth k]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8093946 3001585 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8093946 3001585 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8094419 3000736 SCOP2B (2022-06-29)
Q [auth a]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8094419 3000736 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I,
Y [auth i]		PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
H,
X [auth h]		PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
F,
V [auth f]		PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
E,
U [auth e]		PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
E,
U [auth e]		PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
D,
T [auth d]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
C,
S [auth c]		PF00421Photosystem II protein (PSII)Photosystem II protein- Family
B,
R [auth b]		PF00421Photosystem II protein (PSII)Photosystem II protein- Family
FA [auth z],
P [auth Z]		PF01737YCF9 (Ycf9)YCF9- Family
EA [auth x],
O [auth X]		PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
DA [auth v],
N [auth V]		PF05969Photosystem II complex subunit Ycf12 (PSII_Ycf12)Photosystem II complex subunit Ycf12- Family
CA [auth t],
M [auth T]		PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T proteinThe exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity ...The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity under adverse growth conditions [1].
Domain
BA [auth m],
L [auth M]		PF05151Photosystem II reaction centre M protein (PsbM) (PsbM)Photosystem II reaction centre M protein (PsbM)- Family
AA [auth l],
K [auth L]		PF02419PsbL protein (PsbL)PsbL protein- Family
J [auth K],
Z [auth k]		PF02533Photosystem II 4 kDa reaction centre component (PsbK)Photosystem II 4 kDa reaction centre component- Family
A,
Q [auth a]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I,
Y [auth i]		Photosystem II reaction center protein I-
H,
X [auth h]		Photosystem II reaction center protein H
G,
W [auth g]		PDZ domain-containing protein- - -
F,
V [auth f]		Cytochrome b559 subunit beta
E,
U [auth e]		Cytochrome b559 subunit alpha
D,
T [auth d]		Photosystem II D2 protein
C,
S [auth c]		Photosystem II CP43 reaction center protein
B,
R [auth b]		Photosystem II CP47 reaction center protein
FA [auth z],
P [auth Z]		Photosystem II reaction center protein Z-
EA [auth x],
O [auth X]		Chloroplast photosystem II subunit X-
DA [auth v],
N [auth V]		Photosystem II reaction center protein Psb30-
CA [auth t],
M [auth T]		Photosystem II reaction center protein T-
BA [auth m],
L [auth M]		Photosystem II reaction center protein M-
AA [auth l],
K [auth L]		Photosystem II reaction center protein L-
J [auth K],
Z [auth k]		Photosystem II reaction center protein K-
A,
Q [auth a]		Photosystem II protein D1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I,
Y [auth i]		IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
I,
Y [auth i]		IPR003686Photosystem II PsbIFamily
H,
X [auth h]		IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
H,
X [auth h]		IPR001056Photosystem II reaction centre protein HFamily
G,
W [auth g]		IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
G,
W [auth g]		IPR001478PDZ domainDomain
F,
V [auth f]		IPR006241Photosystem II cytochrome b559, beta subunitFamily
F,
V [auth f]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
F,
V [auth f]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
E,
U [auth e]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
E,
U [auth e]		IPR006217Photosystem II cytochrome b559, alpha subunitFamily
E,
U [auth e]		IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
E,
U [auth e]		IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
E,
U [auth e]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
D,
T [auth d]		IPR005868Photosystem II D2Family
D,
T [auth d]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
D,
T [auth d]		IPR000484Photosynthetic reaction centre, L/MFamily
D,
T [auth d]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
D,
T [auth d]		IPR055266Photosystem II protein D1/D2Family
C,
S [auth c]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C,
S [auth c]		IPR000932Photosystem antenna protein-likeFamily
C,
S [auth c]		IPR005869Photosystem II CP43 reaction centre proteinFamily
C,
S [auth c]		IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
B,
R [auth b]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
R [auth b]		IPR000932Photosystem antenna protein-likeFamily
B,
R [auth b]		IPR017486Photosystem II CP47 reaction centre proteinFamily
FA [auth z],
P [auth Z]		IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
FA [auth z],
P [auth Z]		IPR002644Photosystem II PsbZ, reaction centreFamily
EA [auth x],
O [auth X]		IPR009518Photosystem II PsbXFamily
DA [auth v],
N [auth V]		IPR010284Photosystem II reaction center protein Ycf12Family
CA [auth t],
M [auth T]		IPR001743Photosystem II PsbTFamily
CA [auth t],
M [auth T]		IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
BA [auth m],
L [auth M]		IPR007826Photosystem II PsbMFamily
BA [auth m],
L [auth M]		IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
AA [auth l],
K [auth L]		IPR003372Photosystem II PsbLFamily
AA [auth l],
K [auth L]		IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
J [auth K],
Z [auth k]		IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
J [auth K],
Z [auth k]		IPR003687Photosystem II PsbKFamily
A,
Q [auth a]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
Q [auth a]		IPR005867Photosystem II protein D1Family
A,
Q [auth a]		IPR000484Photosynthetic reaction centre, L/MFamily
A,
Q [auth a]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A,
Q [auth a]		IPR055266Photosystem II protein D1/D2Family