9I7U | pdb_00009i7u

Cryo-EM structure of NDUFA4 bound complex IV within the respirasome complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIc 8093998 3000598 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCytochrome c oxidase subunit h 8094433 3000395 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIa 8094056 3000592 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRubredoxin-like 8093876 3001257 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCytochrome c oxidase subunit E 8094335 3001402 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit IV 8093930 3000582 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCytochrome c oxidase subunit III-like 8094417 3000671 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 8095689 3000633 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) 8094535 3000624 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIb 8094463 3000613 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIa 8094110 3000606 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCytochrome c oxidase subunit I-like 8094379 3000653 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02937Cytochrome c oxidase subunit VIc (COX6C)Cytochrome c oxidase subunit VIc- Family
PF02297Cytochrome oxidase c subunit VIb (COX6B)Cytochrome oxidase c subunit VIbCytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of the potentially heme-binding subunit IVb of the oxidase. Domain
PF00510Cytochrome c oxidase subunit III (COX3)Cytochrome c oxidase subunit IIIDomain
PF00116Cytochrome C oxidase subunit II, periplasmic domain (COX2)Cytochrome C oxidase subunit II, periplasmic domainDomain
PF02790Cytochrome C oxidase subunit II, transmembrane domain (COX2_TM)Cytochrome C oxidase subunit II, transmembrane domain- Family
PF06522NADH-ubiquinone reductase complex 1 MLRQ subunit (B12D)NADH-ubiquinone reductase complex 1 MLRQ subunit- Family
PF02285Cytochrome oxidase c subunit VIII (COX8)Cytochrome oxidase c subunit VIII- Family
PF02238Cytochrome c oxidase subunit VII (COX7a)Cytochrome c oxidase subunit VII- Family
PF00115Cytochrome C and Quinol oxidase polypeptide I (COX1)Cytochrome C and Quinol oxidase polypeptide I- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Cytochrome c oxidase subunit 6C-
Cytochrome c oxidase subunit 6B1
Cytochrome c oxidase subunit 6A1, mitochondrial
Cytochrome c oxidase subunit 5B, mitochondrial
Cytochrome c oxidase subunit 5A, mitochondrial
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial
Cytochrome c oxidase subunit 3
Cytochrome c oxidase subunit 2
Cytochrome c oxidase subunit NDUFA4
Cytochrome c oxidase subunit 8A, mitochondrial
Cytochrome c oxidase subunit 7C, mitochondrial-
Cytochrome c oxidase subunit 7B, mitochondrial
Cytochrome c oxidase subunit 7A2, mitochondrial
Cytochrome c oxidase subunit 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR037169Mitochondrial cytochrome c oxidase subunit VIc/VIIs superfamilyHomologous Superfamily
IPR051389Cytochrome c oxidase subunit VIcFamily
IPR034884Mitochondrial cytochrome c oxidase subunit VIc/VIIsFamily
IPR036549Cytochrome c oxidase subunit 6B/Cytochrome c oxidase assembly factor 6-like superfamilyHomologous Superfamily
IPR048280Cytochrome oxidase c subunit VIb-likeFamily
IPR003213Cytochrome c oxidase, subunit VIbFamily
IPR018507Cytochrome c oxidase, subunit VIa, conserved siteConserved Site
IPR036418Cytochrome c oxidase, subunit VIa superfamilyHomologous Superfamily
IPR001349Cytochrome c oxidase, subunit VIaFamily
IPR002124Cytochrome c oxidase, subunit VbFamily
IPR036972Cytochrome c oxidase, subunit Vb superfamilyHomologous Superfamily
IPR003204Cytochrome c oxidase, subunit Va/VIFamily
IPR036545Cytochrome c oxidase, subunit Va/VI superfamilyHomologous Superfamily
IPR004203Cytochrome c oxidase subunit IV familyFamily
IPR013288Cytochrome c oxidase subunit IVFamily
IPR036639Cytochrome c oxidase subunit IV superfamilyHomologous Superfamily
IPR035973Cytochrome c oxidase subunit III-like superfamilyHomologous Superfamily
IPR000298Cytochrome c oxidase subunit III-likeDomain
IPR033945Cytochrome c oxidase subunit III domainDomain
IPR013833Cytochrome c oxidase, subunit III, 4-helical bundleHomologous Superfamily
IPR024791Cytochrome c oxidase subunit IIIFamily
IPR011759Cytochrome C oxidase subunit II, transmembrane domainDomain
IPR036257Cytochrome C oxidase subunit II, transmembrane domain superfamilyHomologous Superfamily
IPR034210Cytochrome c oxidase subunit 2, C-terminalDomain
IPR045187Cytochrome c/quinol oxidase subunit IIFamily
IPR002429Cytochrome c oxidase subunit II-like C-terminalDomain
IPR008972CupredoxinHomologous Superfamily
IPR001505Copper centre Cu(A)Binding Site
IPR014222Cytochrome c oxidase, subunit IIDomain
IPR010530NADH-ubiquinone reductase complex 1 MLRQ subunitFamily
IPR003205Cytochrome c oxidase, subunit 8Family
IPR036548Cytochrome c oxidase, subunit 8 superfamilyHomologous Superfamily
IPR036636Cytochrome c oxidase subunit VIIc superfamilyHomologous Superfamily
IPR004202Cytochrome c oxidase subunit VIIcFamily
IPR023272Cytochrome C oxidase, subunit VIIB domain superfamilyHomologous Superfamily
IPR008433Cytochrome C oxidase, subunit VIIBFamily
IPR003177Cytochrome c oxidase subunit VIIa, metazoaFamily
IPR036539Cytochrome c oxidase, subunit VIIa superfamilyHomologous Superfamily
IPR039297Cytochrome c oxidase subunit VIIFamily
IPR036927Cytochrome c oxidase-like, subunit I superfamilyHomologous Superfamily
IPR000883Cytochrome c oxidase subunit IFamily
IPR023615Cytochrome c oxidase, subunit I, copper-binding siteBinding Site
IPR023616Cytochrome c oxidase-like, subunit I domainDomain
IPR033944Cytochrome c oxidase subunit I domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP09669
PharosP14854
PharosP12074
PharosP10606
PharosP20674
PharosP13073
PharosP00414
PharosP00403
PharosO00483
PharosP10176
PharosP15954
PharosP24311
PharosP14406
PharosP00395

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
FME Parent Component: MET

RESIDAA0021 , AA0566 , AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891