9I6F | pdb_00009i6f

Cryo-EM structure of HIGD2A bound complex IV


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth H]SCOP2B SuperfamilyCytochrome c oxidase subunit h 8094433 3000395 SCOP2B (2022-06-29)
H [auth G]SCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIa 8094056 3000592 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilyRubredoxin-like 8093876 3001257 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyCytochrome c oxidase subunit E 8094335 3001402 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit IV 8093930 3000582 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyCytochrome c oxidase subunit III-like 8094417 3000671 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyCytochrome c oxidase subunit I-like 8094379 3000653 SCOP2B (2022-06-29)
N [auth M]SCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 8095689 3000633 SCOP2B (2022-06-29)
M [auth L]SCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) 8094535 3000624 SCOP2B (2022-06-29)
L [auth K]SCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIb 8094463 3000613 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIa 8094110 3000606 SCOP2B (2022-06-29)
J [auth I]SCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIc 8093998 3000598 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth H]PF02297Cytochrome oxidase c subunit VIb (COX6B)Cytochrome oxidase c subunit VIbCytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of the potentially heme-binding subunit IVb of the oxidase. Domain
D [auth C]PF00510Cytochrome c oxidase subunit III (COX3)Cytochrome c oxidase subunit IIIDomain
C [auth B]PF00116Cytochrome C oxidase subunit II, periplasmic domain (COX2)Cytochrome C oxidase subunit II, periplasmic domainDomain
C [auth B]PF02790Cytochrome C oxidase subunit II, transmembrane domain (COX2_TM)Cytochrome C oxidase subunit II, transmembrane domain- Family
B [auth A]PF00115Cytochrome C and Quinol oxidase polypeptide I (COX1)Cytochrome C and Quinol oxidase polypeptide I- Family
N [auth M]PF02285Cytochrome oxidase c subunit VIII (COX8)Cytochrome oxidase c subunit VIII- Family
K [auth J]PF02238Cytochrome c oxidase subunit VII (COX7a)Cytochrome c oxidase subunit VII- Family
J [auth I]PF02937Cytochrome c oxidase subunit VIc (COX6C)Cytochrome c oxidase subunit VIc- Family
A [auth N]PF04588Hypoxia induced protein conserved region (HIG_1_N)Hypoxia induced protein conserved region- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth H]Cytochrome c oxidase subunit 6B1
H [auth G]Cytochrome c oxidase subunit 6A1, mitochondrial
G [auth F]Cytochrome c oxidase subunit 5B, mitochondrial
F [auth E]Cytochrome c oxidase subunit 5A, mitochondrial
E [auth D]Cytochrome c oxidase subunit 4 isoform 1, mitochondrial
D [auth C]Cytochrome c oxidase subunit 3
C [auth B]Cytochrome c oxidase subunit 2
B [auth A]Cytochrome c oxidase subunit 1
N [auth M]Cytochrome c oxidase subunit 8A, mitochondrial
M [auth L]Cytochrome c oxidase subunit 7C, mitochondrial-
L [auth K]Cytochrome c oxidase subunit 7B, mitochondrial
K [auth J]Cytochrome c oxidase subunit 7A2, mitochondrial
J [auth I]Cytochrome c oxidase subunit 6C-
A [auth N]HIG1 domain family member 2A, mitochondrial-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth H]IPR036549Cytochrome c oxidase subunit 6B/Cytochrome c oxidase assembly factor 6-like superfamilyHomologous Superfamily
I [auth H]IPR048280Cytochrome oxidase c subunit VIb-likeFamily
I [auth H]IPR003213Cytochrome c oxidase, subunit VIbFamily
H [auth G]IPR018507Cytochrome c oxidase, subunit VIa, conserved siteConserved Site
H [auth G]IPR036418Cytochrome c oxidase, subunit VIa superfamilyHomologous Superfamily
H [auth G]IPR001349Cytochrome c oxidase, subunit VIaFamily
G [auth F]IPR002124Cytochrome c oxidase, subunit VbFamily
G [auth F]IPR036972Cytochrome c oxidase, subunit Vb superfamilyHomologous Superfamily
F [auth E]IPR003204Cytochrome c oxidase, subunit Va/VIFamily
F [auth E]IPR036545Cytochrome c oxidase, subunit Va/VI superfamilyHomologous Superfamily
E [auth D]IPR004203Cytochrome c oxidase subunit IV familyFamily
E [auth D]IPR013288Cytochrome c oxidase subunit IVFamily
E [auth D]IPR036639Cytochrome c oxidase subunit IV superfamilyHomologous Superfamily
D [auth C]IPR035973Cytochrome c oxidase subunit III-like superfamilyHomologous Superfamily
D [auth C]IPR000298Cytochrome c oxidase subunit III-likeDomain
D [auth C]IPR033945Cytochrome c oxidase subunit III domainDomain
D [auth C]IPR013833Cytochrome c oxidase, subunit III, 4-helical bundleHomologous Superfamily
D [auth C]IPR024791Cytochrome c oxidase subunit IIIFamily
C [auth B]IPR011759Cytochrome C oxidase subunit II, transmembrane domainDomain
C [auth B]IPR036257Cytochrome C oxidase subunit II, transmembrane domain superfamilyHomologous Superfamily
C [auth B]IPR034210Cytochrome c oxidase subunit 2, C-terminalDomain
C [auth B]IPR045187Cytochrome c/quinol oxidase subunit IIFamily
C [auth B]IPR002429Cytochrome c oxidase subunit II-like C-terminalDomain
C [auth B]IPR008972CupredoxinHomologous Superfamily
C [auth B]IPR001505Copper centre Cu(A)Binding Site
C [auth B]IPR014222Cytochrome c oxidase, subunit IIDomain
B [auth A]IPR036927Cytochrome c oxidase-like, subunit I superfamilyHomologous Superfamily
B [auth A]IPR000883Cytochrome c oxidase subunit IFamily
B [auth A]IPR023615Cytochrome c oxidase, subunit I, copper-binding siteBinding Site
B [auth A]IPR023616Cytochrome c oxidase-like, subunit I domainDomain
B [auth A]IPR033944Cytochrome c oxidase subunit I domainDomain
N [auth M]IPR003205Cytochrome c oxidase, subunit 8Family
N [auth M]IPR036548Cytochrome c oxidase, subunit 8 superfamilyHomologous Superfamily
M [auth L]IPR036636Cytochrome c oxidase subunit VIIc superfamilyHomologous Superfamily
M [auth L]IPR004202Cytochrome c oxidase subunit VIIcFamily
L [auth K]IPR023272Cytochrome C oxidase, subunit VIIB domain superfamilyHomologous Superfamily
L [auth K]IPR008433Cytochrome C oxidase, subunit VIIBFamily
K [auth J]IPR003177Cytochrome c oxidase subunit VIIa, metazoaFamily
K [auth J]IPR036539Cytochrome c oxidase, subunit VIIa superfamilyHomologous Superfamily
K [auth J]IPR039297Cytochrome c oxidase subunit VIIFamily
J [auth I]IPR037169Mitochondrial cytochrome c oxidase subunit VIc/VIIs superfamilyHomologous Superfamily
J [auth I]IPR051389Cytochrome c oxidase subunit VIcFamily
J [auth I]IPR034884Mitochondrial cytochrome c oxidase subunit VIc/VIIsFamily
A [auth N]IPR007667Hypoxia induced protein, domainDomain
A [auth N]IPR050355Mitochondrial Respiratory Supercomplex Factor 1Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth H]PharosP14854
H [auth G]PharosP12074
G [auth F]PharosP10606
F [auth E]PharosP20674
E [auth D]PharosP13073
D [auth C]PharosP00414
C [auth B]PharosP00403
B [auth A]PharosP00395
N [auth M]PharosP10176
M [auth L]PharosP15954
L [auth K]PharosP24311
K [auth J]PharosP14406
J [auth I]PharosP09669
A [auth N]PharosQ9BW72

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
D [auth C]FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
B [auth A]FME Parent Component: MET

RESIDAA0021 , AA0566 , AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891