9I4T | pdb_00009i4t

Photosystem II from Arabidopsis thaliana


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HA [auth i]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8098834 3001590 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8098834 3001590 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8101549 3001547 SCOP2B (2022-06-29)
GA [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8101549 3001547 SCOP2B (2022-06-29)
FA [auth g]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
MA [auth n]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCytochrome b559 subunits 8098830 3001602 SCOP2B (2022-06-29)
EA [auth f]SCOP2B SuperfamilyCytochrome b559 subunits 8098830 3001602 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCytochrome b559 subunits 8098774 3001602 SCOP2B (2022-06-29)
DA [auth e]SCOP2B SuperfamilyCytochrome b559 subunits 8098774 3001602 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098768 3000736 SCOP2B (2022-06-29)
CA [auth d]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098768 3000736 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPhotosystem II antenna protein-like 8098772 3001674 SCOP2B (2022-06-29)
BA [auth c]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098772 3001674 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyPsbZ-like 8098778 3001624 SCOP2B (2022-06-29)
XA [auth z]SCOP2B SuperfamilyPsbZ-like 8098778 3001624 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem II antenna protein-like 8098770 3001674 SCOP2B (2022-06-29)
AA [auth b]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098770 3001674 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyChlorophyll a-b binding protein 8100724 3000343 SCOP2B (2022-06-29)
RA [auth s]SCOP2B SuperfamilyChlorophyll a-b binding protein 8100724 3000343 SCOP2B (2022-06-29)
QA [auth r]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099114 3000343 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyChlorophyll a-b binding protein 8099114 3000343 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyOMPA barrel-like 8098590 3000208 SCOP2B (2022-06-29)
NA [auth o]SCOP2B SuperfamilyOMPA barrel-like 8098590 3000208 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8098838 3001573 SCOP2B (2022-06-29)
LA [auth m]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8098838 3001573 SCOP2B (2022-06-29)
KA [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8098788 3001523 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8098788 3001523 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8098776 3001585 SCOP2B (2022-06-29)
JA [auth k]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8098776 3001585 SCOP2B (2022-06-29)
Z [auth a]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098954 3000736 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098954 3000736 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HA [auth i]Beta-Caspe9i4ti1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
FBeta-Caspe9i4tF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
EA [auth f]Beta-Caspe9i4tf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
EBeta-Caspe9i4tE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
DA [auth e]Beta-Caspe9i4te1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
XA [auth z]Beta-Caspe9i4tz1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
X [auth Y]Beta-Caspe9i4tY1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
WA [auth y]Beta-Caspe9i4ty1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
VA [auth x]Beta-Caspe9i4tx1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
BBeta-Caspe9i4tB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
AA [auth b]Beta-Caspe9i4tb1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
SA [auth t]Beta-Caspe9i4tt1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
MBeta-Caspe9i4tM1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
LA [auth m]Beta-Caspe9i4tm1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)
KA [auth l]Beta-Caspe9i4tl1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Beta-CaspECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
HA [auth i],
I
PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
GA [auth h],
H
PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
FA [auth g],
G,
MA [auth n],
N
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
DA [auth e],
E
PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
CA [auth d],
D
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
BA [auth c],
C
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
XA [auth z],
Y [auth Z]
PF01737YCF9 (Ycf9)YCF9- Family
WA [auth y],
X [auth Y]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
VA [auth x],
W [auth X]
PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
SA [auth t],
T
PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T proteinThe exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity ...The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity under adverse growth conditions [1].
Domain
RA [auth s],
S
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
QA [auth r],
R
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
OA [auth p],
P
PF01789PsbP (PsbP)PsbPThis entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be ful ...This entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+ [2]. Structure of CyanoP from Synechocystis sp. revealed that it has an alpha-beta-alpha fold containing 10 beta strands organized into two anti-parallel beta-sheets, packed against alpha-helices. This entry covers the first seven beta-stands (beta1-beta7) and the N-terminal alpha-helix [1].
Domain
NA [auth o],
O
PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
A,
Z [auth a]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
HA [auth i],
I
Photosystem II reaction center protein I-
GA [auth h],
H
Photosystem II reaction center protein H
FA [auth g],
G,
MA [auth n],
N
Chlorophyll a-b binding protein 1, chloroplastic
EA [auth f],
F
Cytochrome b559 subunit beta
DA [auth e],
E
Cytochrome b559 subunit alpha
CA [auth d],
D
Photosystem II D2 protein
BA [auth c],
C
Photosystem II CP43 reaction center protein
XA [auth z],
Y [auth Z]
Photosystem II reaction center protein Z-
WA [auth y],
X [auth Y]
Chlorophyll a-b binding protein 2.1, chloroplastic
VA [auth x],
W [auth X]
Expressed protein
UA [auth w],
V [auth W]
Photosystem II reaction center W protein, chloroplastic-
TA [auth u],
U
Photosystem II 5 kDa protein, chloroplastic-
AA [auth b],
B
Photosystem II CP47 reaction center protein
SA [auth t],
T
Photosystem II reaction center protein T-
RA [auth s],
S
Chlorophyll a-b binding protein CP26, chloroplastic
QA [auth r],
R
Chlorophyll a-b binding protein CP29.1, chloroplastic
PA [auth q],
Q
Oxygen-evolving enhancer protein 3-1, chloroplastic
OA [auth p],
P
Oxygen-evolving enhancer protein 2-1, chloroplastic
NA [auth o],
O
Oxygen-evolving enhancer protein 1-1, chloroplastic
LA [auth m],
M
Photosystem II reaction center protein M-
KA [auth l],
L
Photosystem II reaction center protein L-
JA [auth k],
K
Photosystem II reaction center protein K-
IA [auth j],
J
Photosystem II reaction center protein J-
A,
Z [auth a]
Photosystem II protein D1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
HA [auth i],
I
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
HA [auth i],
I
IPR003686Photosystem II PsbIFamily
GA [auth h],
H
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
GA [auth h],
H
IPR001056Photosystem II reaction centre protein HFamily
FA [auth g],
G,
MA [auth n],
N
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
FA [auth g],
G,
MA [auth n],
N
IPR022796Chlorophyll A-B binding proteinFamily
EA [auth f],
F
IPR006241Photosystem II cytochrome b559, beta subunitFamily
EA [auth f],
F
IPR013081Photosystem II cytochrome b559, N-terminalDomain
EA [auth f],
F
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
DA [auth e],
E
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
DA [auth e],
E
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
DA [auth e],
E
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
DA [auth e],
E
IPR013081Photosystem II cytochrome b559, N-terminalDomain
DA [auth e],
E
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
CA [auth d],
D
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
CA [auth d],
D
IPR005868Photosystem II D2Family
CA [auth d],
D
IPR000484Photosynthetic reaction centre, L/MFamily
CA [auth d],
D
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
CA [auth d],
D
IPR055266Photosystem II protein D1/D2Family
BA [auth c],
C
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
BA [auth c],
C
IPR000932Photosystem antenna protein-likeFamily
BA [auth c],
C
IPR005869Photosystem II CP43 reaction centre proteinFamily
BA [auth c],
C
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
XA [auth z],
Y [auth Z]
IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
XA [auth z],
Y [auth Z]
IPR002644Photosystem II PsbZ, reaction centreFamily
WA [auth y],
X [auth Y]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
WA [auth y],
X [auth Y]
IPR022796Chlorophyll A-B binding proteinFamily
VA [auth x],
W [auth X]
IPR009518Photosystem II PsbXFamily
UA [auth w],
V [auth W]
IPR009806Photosystem II PsbW, class 2Family
TA [auth u],
U
IPR040296Photosystem II 5kDa protein, chloroplasticFamily
AA [auth b],
B
IPR017486Photosystem II CP47 reaction centre proteinFamily
AA [auth b],
B
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
AA [auth b],
B
IPR000932Photosystem antenna protein-likeFamily
SA [auth t],
T
IPR001743Photosystem II PsbTFamily
SA [auth t],
T
IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
RA [auth s],
S
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
RA [auth s],
S
IPR022796Chlorophyll A-B binding proteinFamily
QA [auth r],
R
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
QA [auth r],
R
IPR022796Chlorophyll A-B binding proteinFamily
PA [auth q],
Q
IPR008797Oxygen-evolving enhancer protein 3Family
PA [auth q],
Q
IPR054099Oxygen-evolving enhancer protein 3, plantsFamily
PA [auth q],
Q
IPR023222PsbQ-like domain superfamilyHomologous Superfamily
OA [auth p],
P
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
OA [auth p],
P
IPR002683PsbP, C-terminalDomain
NA [auth o],
O
IPR002628Photosystem II extrinsic protein OFamily
NA [auth o],
O
IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
LA [auth m],
M
IPR007826Photosystem II PsbMFamily
LA [auth m],
M
IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
KA [auth l],
L
IPR003372Photosystem II PsbLFamily
KA [auth l],
L
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
JA [auth k],
K
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
JA [auth k],
K
IPR003687Photosystem II PsbKFamily
IA [auth j],
J
IPR002682Photosystem II PsbJFamily
IA [auth j],
J
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
A,
Z [auth a]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
Z [auth a]
IPR005867Photosystem II protein D1Family
A,
Z [auth a]
IPR000484Photosynthetic reaction centre, L/MFamily
A,
Z [auth a]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A,
Z [auth a]
IPR055266Photosystem II protein D1/D2Family