Photosystem II from Arabidopsis thaliana
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| HA [auth i] | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8098834 | 3001590 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8098834 | 3001590 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8101549 | 3001547 | SCOP2B (2022-06-29) |
| GA [auth h] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8101549 | 3001547 | SCOP2B (2022-06-29) |
| FA [auth g] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8076980 | 3000343 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8076980 | 3000343 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8076980 | 3000343 | SCOP2B (2022-06-29) |
| MA [auth n] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8076980 | 3000343 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Cytochrome b559 subunits | 8098830 | 3001602 | SCOP2B (2022-06-29) |
| EA [auth f] | SCOP2B Superfamily | Cytochrome b559 subunits | 8098830 | 3001602 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Cytochrome b559 subunits | 8098774 | 3001602 | SCOP2B (2022-06-29) |
| DA [auth e] | SCOP2B Superfamily | Cytochrome b559 subunits | 8098774 | 3001602 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8098768 | 3000736 | SCOP2B (2022-06-29) |
| CA [auth d] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8098768 | 3000736 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Photosystem II antenna protein-like | 8098772 | 3001674 | SCOP2B (2022-06-29) |
| BA [auth c] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8098772 | 3001674 | SCOP2B (2022-06-29) |
| Y [auth Z] | SCOP2B Superfamily | PsbZ-like | 8098778 | 3001624 | SCOP2B (2022-06-29) |
| XA [auth z] | SCOP2B Superfamily | PsbZ-like | 8098778 | 3001624 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Photosystem II antenna protein-like | 8098770 | 3001674 | SCOP2B (2022-06-29) |
| AA [auth b] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8098770 | 3001674 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8100724 | 3000343 | SCOP2B (2022-06-29) |
| RA [auth s] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8100724 | 3000343 | SCOP2B (2022-06-29) |
| QA [auth r] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099114 | 3000343 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099114 | 3000343 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | OMPA barrel-like | 8098590 | 3000208 | SCOP2B (2022-06-29) |
| NA [auth o] | SCOP2B Superfamily | OMPA barrel-like | 8098590 | 3000208 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8098838 | 3001573 | SCOP2B (2022-06-29) |
| LA [auth m] | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8098838 | 3001573 | SCOP2B (2022-06-29) |
| KA [auth l] | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8098788 | 3001523 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8098788 | 3001523 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8098776 | 3001585 | SCOP2B (2022-06-29) |
| JA [auth k] | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8098776 | 3001585 | SCOP2B (2022-06-29) |
| Z [auth a] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8098954 | 3000736 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8098954 | 3000736 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| HA [auth i] | Beta-Casp | e9i4ti1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| F | Beta-Casp | e9i4tF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| EA [auth f] | Beta-Casp | e9i4tf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| E | Beta-Casp | e9i4tE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| DA [auth e] | Beta-Casp | e9i4te1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| XA [auth z] | Beta-Casp | e9i4tz1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| X [auth Y] | Beta-Casp | e9i4tY1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| WA [auth y] | Beta-Casp | e9i4ty1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| VA [auth x] | Beta-Casp | e9i4tx1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| B | Beta-Casp | e9i4tB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| AA [auth b] | Beta-Casp | e9i4tb1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| SA [auth t] | Beta-Casp | e9i4tt1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| M | Beta-Casp | e9i4tM1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| LA [auth m] | Beta-Casp | e9i4tm1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
| KA [auth l] | Beta-Casp | e9i4tl1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Beta-Casp | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| HA [auth i], I | PF02532 | Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI) | Photosystem II reaction centre I protein (PSII 4.8 kDa protein) | - | Family |
| GA [auth h], H | PF00737 | Photosystem II 10 kDa phosphoprotein (PsbH) | Photosystem II 10 kDa phosphoprotein | - | Family |
| FA [auth g], G, MA [auth n], N | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| DA [auth e], E | PF00284 | Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a) | Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit | - | Family |
| CA [auth d], D | PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |
| BA [auth c], C | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
| XA [auth z], Y [auth Z] | PF01737 | YCF9 (Ycf9) | YCF9 | - | Family |
| WA [auth y], X [auth Y] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| VA [auth x], W [auth X] | PF06596 | Photosystem II reaction centre X protein (PsbX) (PsbX) | Photosystem II reaction centre X protein (PsbX) | - | Family |
| SA [auth t], T | PF01405 | Photosystem II reaction centre T protein (PsbT) | Photosystem II reaction centre T protein | The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity ... | Domain |
| RA [auth s], S | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| QA [auth r], R | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| OA [auth p], P | PF01789 | PsbP (PsbP) | PsbP | This entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be ful ... | Domain |
| NA [auth o], O | PF01716 | Manganese-stabilising protein / photosystem II polypeptide (MSP) | Manganese-stabilising protein / photosystem II polypeptide | - | Family |
| A, Z [auth a] | PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |














