9I1W | pdb_00009i1w

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth LE]60S ribosomal protein L6
H [auth LD]60S ribosomal protein l5-like protein
G [auth LC]60S ribosomal protein L4-like protein
F [auth LB]60S ribosomal protein L3-like protein
YA [auth PN]Nascent chain N-terminus---
E [auth LA]60S ribosomal protein L2-like protein
XA [auth PC]Nascent chain C-terminus---
WA [auth Ls]60S acidic ribosomal protein P0
UA [auth Lq]Putative 60S ribosomal protein
TA [auth Lp]60S ribosomal protein L43-like protein
SA [auth Lo]60S ribosomal protein L44-like protein
RA [auth Ln],
VA [auth Lr]
60S ribosomal protein L41-A
QA [auth Lm]Putative ribosomal protein
PA [auth Ll]Ribosomal protein eL39---
OA [auth Lk]60S ribosomal protein L38-like protein
NA [auth Lj]Ribosomal protein L37
D [auth 9]E-site tRNA (5'-R(P*CP*CP*A)-3')---
MA [auth Li]60S ribosomal protein L36
LA [auth Lh]Dolichyl-diphosphooligosaccharide--protein glycotransferase
KA [auth Lg]Ribosomal protein l34-like protein
JA [auth Lf]60S ribosomal protein l33-like protein
IA [auth Le]60S ribosomal protein L32-like protein
HA [auth Ld]Putative 60S ribosomal protein
GA [auth Lc]60S ribosomal protein l30-like protein -
FA [auth Lb]60S ribosomal protein L29---
EA [auth La]60S ribosomal protein L28-like protein---
DA [auth LZ]60S ribosomal protein L27
C [auth 4]5.8S RNA---
CA [auth LY]60S ribosomal protein L26-like protein
BA [auth LX]60S ribosomal protein L25-like protein
AA [auth LW]60S ribosomal protein L24-like protein
Z [auth LV]60S ribosomal protein l23-like protein
Y [auth LU]60S ribosomal protein L22-like protein
X [auth LT]60S ribosomal protein l21-like protein
W [auth LS]60S ribosomal protein L20
V [auth LR]Ribosomal protein L19
U [auth LQ]Ribosomal protein L18-like protein
T [auth LP]60S ribosomal protein l17-like protein
B [auth 3]5S RNA---
S [auth LO]60S ribosomal protein L16-like protein
R [auth LN]Ribosomal protein L15
Q [auth LM]60S ribosomal protein L14-like protein
P [auth LL]60S ribosomal protein L13
O [auth LK]60S ribosomal protein L12-like protein
N [auth LJ]Putative ribosomal protein
M [auth LI]60S ribosomal protein L10-like protein
L [auth LH]60S ribosomal protein l9-like protein
K [auth LG]60S ribosomal protein L8
J [auth LF]60S ribosomal protein l7-like protein
A [auth 1]26S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth LE]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
I [auth LE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
I [auth LE]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
I [auth LE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
I [auth LE]IPR000915Large ribosomal subunit protein eL6Family
H [auth LD]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
H [auth LD]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
G [auth LC]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
G [auth LC]IPR002136Large ribosomal subunit protein uL4Family
G [auth LC]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
G [auth LC]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
G [auth LC]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
F [auth LB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
F [auth LB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
F [auth LB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
F [auth LB]IPR000597Large ribosomal subunit protein uL3Family
F [auth LB]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
E [auth LA]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
E [auth LA]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
E [auth LA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
E [auth LA]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth LA]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
E [auth LA]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
E [auth LA]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
E [auth LA]IPR002171Large ribosomal subunit protein uL2Family
WA [auth Ls]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
WA [auth Ls]IPR001790Large ribosomal subunit protein uL10Family
WA [auth Ls]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
WA [auth Ls]IPR050323Universal ribosomal protein uL10Family
WA [auth Ls]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
WA [auth Ls]IPR030670Large ribosomal subunit protein uL10, eukaryotaFamily
UA [auth Lq]IPR029004Ribosomal eL28/Mak16Domain
UA [auth Lq]IPR002672Large ribosomal subunit protein eL28Family
TA [auth Lp]IPR002674Large ribosomal subunit protein eL43Family
TA [auth Lp]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
TA [auth Lp]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
TA [auth Lp]IPR050522Eukaryotic ribosomal protein eL43Family
SA [auth Lo]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
SA [auth Lo]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
SA [auth Lo]IPR000552Large ribosomal subunit protein eL42Family
RA [auth Ln],
VA [auth Lr]
IPR007836Large ribosomal subunit protein eS32Family
QA [auth Lm]IPR048540Rrn7/TAF1B, N-terminal cyclin domainDomain
QA [auth Lm]IPR019954Ubiquitin conserved siteConserved Site
QA [auth Lm]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
QA [auth Lm]IPR048538Rrn7/TAF1B, C-terminal cyclin domainDomain
QA [auth Lm]IPR000626Ubiquitin-like domainDomain
QA [auth Lm]IPR033599RNA polymerase I transcription initiation factor TAF1B/Rrn7Family
QA [auth Lm]IPR019956Ubiquitin domainDomain
QA [auth Lm]IPR001975Large ribosomal subunit protein eL40 domainDomain
QA [auth Lm]IPR021752Transcription initiation factor Rrn7, Zinc-fingerDomain
QA [auth Lm]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
QA [auth Lm]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
OA [auth Lk]IPR002675Large ribosomal subunit protein eL38Family
OA [auth Lk]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
NA [auth Lj]IPR001569Large ribosomal subunit protein eL37Family
NA [auth Lj]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
NA [auth Lj]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
NA [auth Lj]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
MA [auth Li]IPR000509Large ribosomal subunit protein eL36Family
MA [auth Li]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
LA [auth Lh]IPR003674Oligosaccharyl transferase, STT3 subunitFamily
LA [auth Lh]IPR048307Oligosaccharyl transferase STT3, N-terminal domainDomain
LA [auth Lh]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
LA [auth Lh]IPR001854Large ribosomal subunit protein uL29Family
LA [auth Lh]IPR048999STT3/PglB/AglB, core domainDomain
KA [auth Lg]IPR008195Large ribosomal subunit protein eL34Family
KA [auth Lg]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
KA [auth Lg]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
JA [auth Lf]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
JA [auth Lf]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
JA [auth Lf]IPR001780Large ribosomal subunit protein eL33Family
JA [auth Lf]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
IA [auth Le]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
IA [auth Le]IPR001515Large ribosomal subunit protein eL32Family
HA [auth Ld]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
HA [auth Ld]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
HA [auth Ld]IPR000054Large ribosomal subunit protein eL31Family
GA [auth Lc]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
GA [auth Lc]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
GA [auth Lc]IPR000231Large ribosomal subunit protein eL30Family
GA [auth Lc]IPR039109Large ribosomal subunit protein eL30-likeFamily
GA [auth Lc]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
DA [auth LZ]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
DA [auth LZ]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
DA [auth LZ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
DA [auth LZ]IPR001141Large ribosomal subunit protein eL27Family
DA [auth LZ]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
CA [auth LY]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
CA [auth LY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
CA [auth LY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth LY]IPR005824KOWDomain
CA [auth LY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth LX]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
BA [auth LX]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
BA [auth LX]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
BA [auth LX]IPR013025Large ribosomal subunit protein uL23-likeFamily
AA [auth LW]IPR056366Large ribosomal subunit protein eL24Family
AA [auth LW]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
AA [auth LW]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
Z [auth LV]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Z [auth LV]IPR000218Large ribosomal subunit protein uL14Family
Z [auth LV]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
Y [auth LU]IPR002671Large ribosomal subunit protein eL22Family
Y [auth LU]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
X [auth LT]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
X [auth LT]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
X [auth LT]IPR001147Large ribosomal subunit protein eL21Family
X [auth LT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth LS]IPR028877Large ribosomal subunit protein eL20Family
W [auth LS]IPR023573Large ribosomal subunit protein eL20 domainDomain
W [auth LS]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
V [auth LR]IPR056809GCN1-like, HEAT repeatsDomain
V [auth LR]IPR016024Armadillo-type foldHomologous Superfamily
V [auth LR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
V [auth LR]IPR057546Stalled ribosome sensor GCN1-like, HEAT repeats regionDomain
V [auth LR]IPR057260Ribosomal protein L19e, C-terminal domainDomain
V [auth LR]IPR004155PBS lyase HEAT-like repeatRepeat
V [auth LR]IPR034085TOG domainDomain
V [auth LR]IPR019399Parkin co-regulated proteinFamily
V [auth LR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
V [auth LR]IPR021133HEAT, type 2Repeat
V [auth LR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
V [auth LR]IPR057259Ribosomal protein L19e, N-terminal domainDomain
V [auth LR]IPR011989Armadillo-like helicalHomologous Superfamily
V [auth LR]IPR022716Gcn1, N-terminalDomain
V [auth LR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
V [auth LR]IPR000196Large ribosomal subunit protein eL19 domainDomain
V [auth LR]IPR056810Stalled ribosome sensor GCN1-like, N-terminalDomain
U [auth LQ]IPR021131Large ribosomal subunit protein uL15/eL18Domain
U [auth LQ]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
U [auth LQ]IPR000039Large ribosomal subunit protein eL18Family
U [auth LQ]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
T [auth LP]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
T [auth LP]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
T [auth LP]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
T [auth LP]IPR001063Large ribosomal subunit protein uL22Family
S [auth LO]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
S [auth LO]IPR005822Large ribosomal subunit protein uL13Family
S [auth LO]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
S [auth LO]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
R [auth LN]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
R [auth LN]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
R [auth LN]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
R [auth LN]IPR000439Large ribosomal subunit protein eL15Family
Q [auth LM]IPR039660Large ribosomal subunit protein eL14Family
Q [auth LM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Q [auth LM]IPR002784Large ribosomal subunit protein eL14 domainDomain
Q [auth LM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
P [auth LL]IPR001380Large ribosomal subunit protein eL13Family
P [auth LL]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
O [auth LK]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
O [auth LK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
O [auth LK]IPR000911Ribosomal protein uL11Family
O [auth LK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
O [auth LK]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
O [auth LK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
N [auth LJ]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
N [auth LJ]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
N [auth LJ]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
N [auth LJ]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
N [auth LJ]IPR002132Large ribosomal subunit protein uL5Family
M [auth LI]IPR001197Large ribosomal subunit protein uL16, eukaryota/archaeaFamily
M [auth LI]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
M [auth LI]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryota/archaeaConserved Site
M [auth LI]IPR016180Large ribosomal subunit protein uL16 domainDomain
M [auth LI]IPR047873Large ribosomal subunit protein uL16Family
L [auth LH]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
L [auth LH]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
L [auth LH]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
L [auth LH]IPR000702Large ribosomal subunit protein uL6-likeFamily
K [auth LG]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
K [auth LG]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
K [auth LG]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
K [auth LG]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
K [auth LG]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
K [auth LG]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
J [auth LF]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
J [auth LF]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
J [auth LF]IPR039699Large ribosomal subunit protein uL30Family
J [auth LF]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
J [auth LF]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
J [auth LF]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
YA [auth PN]UNK
XA [auth PC]UNK
C [auth 4]OMG Parent Component: G

C [auth 4]PSU Parent Component: U

S [auth LO]ACE RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

PSI-MOD :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
A [auth 1]1MA Parent Component: A

RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

A [auth 1]5MC Parent Component: C

RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

A [auth 1]A2M Parent Component: A

RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

A [auth 1]OMC Parent Component: C

RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

A [auth 1]OMG Parent Component: G

RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

A [auth 1]OMU Parent Component: U

RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

A [auth 1]PSU Parent Component: U

RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

A [auth 1]UR3 Parent Component: U

RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

A [auth 1]UY1 RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354