9HTY | pdb_00009hty

Crystal structure of Ami2B domain of DS6A-LysA in complex with L-Ala-D-iso-Gln-L-Lys- D-Ala-D-Ala

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF01510N-acetylmuramoyl-L-alanine amidase (Amidase_2)N-acetylmuramoyl-L-alanine amidaseThis family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The ...This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth F],
E [auth H],
F [auth I]		L-Ala-D-iso-Gln-L-Lys- D-Ala-D-Ala---
A, B, C
N-acetylmuramoyl-L-alanine amidase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR002502N-acetylmuramoyl-L-alanine amidase domainDomain
A, B, C
IPR036505N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamilyHomologous Superfamily
A, B, C
IPR023346Lysozyme-like domain superfamilyHomologous Superfamily
A, B, C
IPR051206N-acetylmuramoyl-L-alanine amidase 2Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
D [auth F],
E [auth H],
F [auth I]		DAL :  AA0111 , AA0191

:  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862
D [auth F],
E [auth H],
F [auth I]		ZGL :  AA0111 , AA0191