Annotations: 9HMI

Crystal structure of the Calf domains of Integrin Alpha5 in complex with angiopoietin2 peptide

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth P]	Angiopoietin-2	protein binding binding signaling receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity protein tyrosine kinase binding kinase binding receptor tyrosine kinase binding enzyme binding protein kinase binding cation binding protein binding binding signaling receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity protein tyrosine kinase binding kinase binding receptor tyrosine kinase binding enzyme binding protein kinase binding cation binding ion binding metal ion binding small molecule binding	multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding positive regulation of coagulation regulation of biological process positive regulation of biological process multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding positive regulation of coagulation regulation of biological process positive regulation of biological process positive regulation of multicellular organismal process regulation of multicellular organismal process regulation of coagulation developmental process blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development tube morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development blood vessel development system development sexual reproduction cellular developmental process reproductive process multicellular organismal reproductive process cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction gamete generation cell differentiation germ cell development cellular process multi-multicellular organism process maternal process involved in female pregnancy female pregnancy multi-organism reproductive process response to activity animal organ development renal system development kidney vasculature development glomerulus development renal system vasculature development glomerulus vasculature development nephron development kidney development negative regulation of positive chemotaxis positive chemotaxis chemotaxis negative regulation of locomotion regulation of response to external stimulus negative regulation of response to stimulus negative regulation of biological process response to external stimulus negative regulation of chemotaxis regulation of chemotaxis regulation of positive chemotaxis taxis regulation of response to stimulus response to chemical regulation of locomotion negative regulation of response to external stimulus locomotion cellular response to stimulus regulation of cellular process cell surface receptor signaling pathway signaling Tie signaling pathway cell surface receptor protein tyrosine kinase signaling pathway cell communication signal transduction enzyme-linked receptor protein signaling pathway response to hexose response to monosaccharide response to carbohydrate response to glucose response to oxygen-containing compound regulation of cell motility regulation of blood vessel endothelial cell migration endothelial cell migration negative regulation of endothelial cell migration negative regulation of blood vessel endothelial cell migration regulation of cell migration negative regulation of cellular process regulation of endothelial cell migration negative regulation of cell motility blood vessel endothelial cell migration cell migration cell motility negative regulation of cell migration response to mechanical stimulus response to abiotic stimulus biosynthetic process metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process cellular response to endogenous stimulus cellular response to growth factor stimulus response to endogenous stimulus response to growth factor regulation of developmental process regulation of vasculature development positive regulation of developmental process regulation of anatomical structure morphogenesis regulation of multicellular organismal development positive regulation of angiogenesis positive regulation of vasculature development regulation of angiogenesis regulation of cell-substrate adhesion regulation of cell adhesion cell-substrate adhesion negative regulation of cell adhesion cell adhesion negative regulation of cell-substrate adhesion response to decreased oxygen levels response to hypoxia response to oxygen levels animal organ regeneration regeneration negative regulation of blood vessel morphogenesis negative regulation of developmental process negative regulation of angiogenesis negative regulation of vasculature development negative regulation of multicellular organismal process	cellular anatomical structure extracellular region cell projection
A	Integrin alpha-5	protein binding binding signaling receptor binding platelet-derived growth factor receptor binding growth factor receptor binding virus receptor activity exogenous protein binding cation binding ion binding calcium ion binding metal ion binding small molecule binding molecular transducer activity signaling receptor activity protein binding binding signaling receptor binding platelet-derived growth factor receptor binding growth factor receptor binding virus receptor activity exogenous protein binding cation binding ion binding calcium ion binding metal ion binding small molecule binding molecular transducer activity signaling receptor activity cell adhesion molecule binding protein-containing complex binding integrin binding epidermal growth factor receptor binding cytokine receptor binding vascular endothelial growth factor receptor binding vascular endothelial growth factor receptor 2 binding	response to stimulus response to activity response to muscle activity regulation of biological process regulation of cellular process regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process cell-substrate adhesion cell adhesion positive regulation of cell-substrate adhesion cellular process response to stimulus response to activity response to muscle activity regulation of biological process regulation of cellular process regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process cell-substrate adhesion cell adhesion positive regulation of cell-substrate adhesion cellular process positive regulation of cellular process cellular response to stimulus positive regulation of cell communication cellular response to growth factor stimulus positive regulation of signal transduction signaling regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway cell communication regulation of vascular endothelial growth factor receptor signaling pathway positive regulation of response to stimulus cellular response to endogenous stimulus signal transduction enzyme-linked receptor protein signaling pathway regulation of signaling cell surface receptor signaling pathway response to endogenous stimulus regulation of cellular response to growth factor stimulus vascular endothelial growth factor receptor signaling pathway regulation of response to stimulus positive regulation of vascular endothelial growth factor receptor signaling pathway regulation of cell communication response to growth factor positive regulation of signaling catabolic process autophagy metabolic process process utilizing autophagic mechanism negative regulation of programmed cell death regulation of apoptotic process regulation of anoikis negative regulation of biological process regulation of programmed cell death cell death negative regulation of anoikis negative regulation of apoptotic process anoikis negative regulation of cellular process apoptotic process programmed cell death regulation of vascular endothelial growth factor signaling pathway regulation of cellular response to vascular endothelial growth factor stimulus positive regulation of vascular endothelial growth factor signaling pathway vascular endothelial growth factor signaling pathway cellular response to vascular endothelial growth factor stimulus behavior multicellular organismal process system process learning or memory nervous system process cognition memory heterophilic cell-cell adhesion cell-cell adhesion CD40 signaling pathway developmental process wound healing epithelium development morphogenesis of an epithelium epiboly involved in wound healing tissue development morphogenesis of an epithelial sheet wound healing, spreading of epidermal cells tissue morphogenesis anatomical structure morphogenesis response to stress anatomical structure development epiboly cell migration wound healing, spreading of cells cell motility response to wounding negative regulation of catabolic process negative regulation of metabolic process regulation of catabolic process regulation of autophagy negative regulation of autophagy regulation of metabolic process leukocyte cell-cell adhesion heterotypic cell-cell adhesion cell-cell adhesion mediated by integrin cell adhesion mediated by integrin cell-matrix adhesion blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development multicellular organism development tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development system development multi-multicellular organism process reproductive process female pregnancy multi-organism reproductive process formation of primary germ layer cellular developmental process embryonic morphogenesis embryo development gastrulation endoderm development cell differentiation endoderm formation endodermal cell differentiation integrin-mediated signaling pathway cellular component organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly cell-substrate junction assembly cell-substrate junction organization cellular component organization or biogenesis positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration locomotion regulation of sprouting angiogenesis regulation of developmental process regulation of vasculature development positive regulation of developmental process positive regulation of sprouting angiogenesis regulation of multicellular organismal process regulation of anatomical structure morphogenesis regulation of multicellular organismal development positive regulation of angiogenesis sprouting angiogenesis positive regulation of vasculature development regulation of angiogenesis positive regulation of multicellular organismal process	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane cell surface external side of plasma membrane side of membrane protein-containing complex cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane cell surface external side of plasma membrane side of membrane protein-containing complex integrin alpha5-beta1 complex plasma membrane protein complex membrane protein complex integrin complex plasma membrane signaling receptor complex signaling receptor complex protein complex involved in cell adhesion glutamatergic synapse membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system ruffle cell projection cell leading edge plasma membrane bounded cell projection anchoring junction focal adhesion cell-substrate junction alphav-beta3 integrin-vitronectin complex cytoplasmic vesicle intracellular vesicle vesicle endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth P]	IPR037579	Fibrinogen/angiopoietin-like	Family
B [auth P]	IPR020837	Fibrinogen, conserved site	Conserved Site
B [auth P]	IPR014716	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Homologous Superfamily
B [auth P]	IPR002181	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Domain
B [auth P]	IPR057439	Angiopoietin-1/2/4 domain	Domain
B [auth P]	IPR036056	Fibrinogen-like, C-terminal	Homologous Superfamily
A	IPR013517	FG-GAP repeat	Repeat
A	IPR048286	Integrin alpha, third immunoglobulin-like domain	Domain
A	IPR013649	Integrin alpha, first immunoglubulin-like domain	Domain
A	IPR048285	Integrin alpha, second immunoglobulin-like domain	Domain
A	IPR032695	Integrin domain superfamily	Homologous Superfamily
A	IPR013519	Integrin alpha beta-propellor	Repeat
A	IPR000413	Integrin alpha chain	Family
A	IPR028994	Integrin alpha, N-terminal	Homologous Superfamily
A	IPR018184	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth P]	: O15123	angiosarcoma wet macular degeneration adrenal cortex carcinoma cutaneous lupus erythematosus glioblastoma lung cancer medulloblastoma oligodendroglioma pilocytic astrocytoma dermatomyositis interstitial cystitis malignant ependymoma microcephaly 1, primary, autosomal recessive osteosarcoma transitional cell carcinoma angiosarcoma wet macular degeneration adrenal cortex carcinoma cutaneous lupus erythematosus glioblastoma lung cancer medulloblastoma oligodendroglioma pilocytic astrocytoma dermatomyositis interstitial cystitis malignant ependymoma microcephaly 1, primary, autosomal recessive osteosarcoma transitional cell carcinoma breast cancer diabetic macular edema leukopenia malignant glioma nasopharyngeal carcinoma ovarian cancer
A	: P08648	squamous cell carcinoma Gliosis pancreatic ductal adenocarcinoma ulcerative colitis gastric carcinoma ischemia reperfusion injury malignant colon neoplasm malignant mesothelioma non-small cell lung carcinoma psoriasis subependymal giant cell astrocytoma breast cancer gastric neoplasm hereditary diffuse gastric adenocarcinoma lung adenocarcinoma squamous cell carcinoma Gliosis pancreatic ductal adenocarcinoma ulcerative colitis gastric carcinoma ischemia reperfusion injury malignant colon neoplasm malignant mesothelioma non-small cell lung carcinoma psoriasis subependymal giant cell astrocytoma breast cancer gastric neoplasm hereditary diffuse gastric adenocarcinoma lung adenocarcinoma malignant ependymoma osteosarcoma tuberculosis gastric cancer glioblastoma interstitial cystitis lung carcinoma malignant glioma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9HMI | pdb_00009hmi

Crystal structure of the Calf domains of Integrin Alpha5 in complex with angiopoietin2 peptide

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation