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 9HMA | pdb_00009hma

Cryo-EM structure of apo human separase


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AIntegrin_betae9hmaA3 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Integrin_betaECOD (v295.2)
Ae9hmaA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: Hypothetical protein YqbG-likeF:ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03568Separin, protease domain (Separin_C)Separin, protease domainThis entry represents the C-terminal caspase-like protease domain found in Separin. Separin is a cysteine protease critical for chromosome segregation during mitosis and meiosis, exhibits a conserved multi-domain architecture across eukaryotes. Separ ...This entry represents the C-terminal caspase-like protease domain found in Separin. Separin is a cysteine protease critical for chromosome segregation during mitosis and meiosis, exhibits a conserved multi-domain architecture across eukaryotes. Separin contains an N-terminal HEAT/ARM repeats which allows the protein to bind regulatory partners like securin and cyclin B1; followed by a TPR-like domain which binds phosphorylated residues and a C-terminal caspase-like protease domain which contains a catalytic triad (Cys-His-Asp) and recognises substrates with a conserved arginine at the P1 position [1,3]. The C-terminal domain is structurally related to caspases but includes a unique substrate-binding subdomain (PPD) [2,4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Separin

InterPro: Protein Family Classification InterPro Database Homepage