Structure of FI6-focused design_03 scaffold in complex with FI6-Fab


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DPAD_Ne9hi4D1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
CPAD_Ne9hi4C1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
F [auth L]SPRYe9hi4L1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: SPRYECOD (v295.2)
BSPRYe9hi4B1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: SPRYECOD (v295.2)
E [auth K]DNA_ligase_A_Ne9hi4K1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: DNA_ligase_A_NECOD (v295.2)
ADNA_ligase_A_Ne9hi4A1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: DNA_ligase_A_NECOD (v295.2)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B,
F [auth L]
Light ChainIGKV4 Kappafi6-focused design_03SAbDab (2026-08-21)
A,
E [auth K]
Heavy ChainIGHV3 -fi6-focused design_03SAbDab (2026-08-21)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF13472GDSL-like Lipase/Acylhydrolase family (Lipase_GDSL_2)GDSL-like Lipase/Acylhydrolase familyThis family of presumed lipases and related enzymes are similar to Pfam:PF00657. Domain

InterPro: Protein Family Classification InterPro Database Homepage

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
SEP Parent Component: SER

AA0037

:  O-phospho-L-serine MOD:00046