9HHL | pdb_00009hhl

Structure of Dynein-Dynactin-NuMA-LIS1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth K]SCOP2B SuperfamilySubunits of heterodimeric actin filament capping protein Capz 8077311 3001499 SCOP2B (2022-06-29)
LA [auth z]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
KA [auth w]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
IA [auth t]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
HA [auth s]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF08385Dynein heavy chain, N-terminal region 1 (DHC_N1)Dynein heavy chain, N-terminal region 1- Family
PF00022Actin (Actin)Actin- Family
M [auth K]PF01267F-actin capping protein alpha subunit (F-actin_cap_A)F-actin capping protein alpha subunit- Family
N [auth L]PF01115F-actin capping protein, beta subunit (F_actin_cap_B)F-actin capping protein, beta subunit- Family
O [auth M],
P [auth N],
R [auth P],
S [auth Q],
V
PF04912Dynamitin (Dynamitin)Dynamitin- Family
O [auth M],
P [auth N],
R [auth P],
S [auth Q],
V
PF08385Dynein heavy chain, N-terminal region 1 (DHC_N1)Dynein heavy chain, N-terminal region 1- Family
Q [auth O],
T [auth R]
PF07426Dynactin subunit p22 (Dynactin_p22)Dynactin subunit p22- Family
PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain
PF21711Dynactin subunit 5 (DCTN5)Dynactin subunit 5- Repeat
X [auth Y]PF05502Dynactin p62 family (Dynactin_p62)Dynactin p62 family- Family
MA [auth S],
NA [auth T]
PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth p],
AA [auth g],
BA [auth h],
FA [auth o]
Cytoplasmic dynein 1 intermediate chain 2
B [auth 1],
C [auth 2]
Nuclear mitotic apparatus protein 1,Methylated-DNA--protein-cysteine methyltransferase
ARP1 actin related protein 1 homolog A -
J [auth H]Actin, cytoplasmic 1
L [auth J]Arp11-
M [auth K]Capping protein (Actin filament) muscle Z-line, alpha 1
N [auth L]F-actin-capping protein subunit beta
O [auth M],
P [auth N],
R [auth P],
S [auth Q],
V
Dynactin subunit 2-
Q [auth O],
T [auth R]
Dynactin subunit 3-
Dynactin 6
Dynactin subunit 5-
X [auth Y]Dynactin subunit 4- -
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
Cytoplasmic dynein 1 heavy chain 1
CA [auth j],
GA [auth q],
JA [auth u]
Cytoplasmic dynein 1 light intermediate chain 2
HA [auth s],
IA [auth t],
KA [auth w],
LA [auth z]
Dynein light chain roadblock-type 1
MA [auth S],
NA [auth T]
Dynactin subunit 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth p],
AA [auth g],
BA [auth h],
FA [auth o]
IPR025956Cytoplasmic dynein 1 intermediate chain 1/2Family
A [auth p],
AA [auth g],
BA [auth h],
FA [auth o]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
A [auth p],
AA [auth g],
BA [auth h],
FA [auth o]
IPR001680WD40 repeatRepeat
A [auth p],
AA [auth g],
BA [auth h],
FA [auth o]
IPR050687Dynein Intermediate ChainFamily
A [auth p],
AA [auth g],
BA [auth h],
FA [auth o]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B [auth 1],
C [auth 2]
IPR008332Methylguanine DNA methyltransferase, ribonuclease-like domainDomain
B [auth 1],
C [auth 2]
IPR036217Methylated DNA-protein cysteine methyltransferase, DNA binding domainHomologous Superfamily
B [auth 1],
C [auth 2]
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
B [auth 1],
C [auth 2]
IPR036631Methylated DNA-protein cysteine methyltransferase domain superfamilyHomologous Superfamily
B [auth 1],
C [auth 2]
IPR014048Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA bindingDomain
B [auth 1],
C [auth 2]
IPR001497Methylated-DNA-[protein]-cysteine S-methyltransferase, active siteActive Site
B [auth 1],
C [auth 2]
IPR048726Nuclear mitotic apparatus protein 1, LGN binding domainDomain
B [auth 1],
C [auth 2]
IPR051841Microtubule and Golgi organization proteinFamily
B [auth 1],
C [auth 2]
IPR048724Nuclear mitotic apparatus protein 1, N-terminal hook domainDomain
IPR020902Actin/actin-like conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
J [auth H]IPR020902Actin/actin-like conserved siteConserved Site
J [auth H]IPR004001Actin, conserved siteConserved Site
J [auth H]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
J [auth H]IPR004000Actin familyFamily
L [auth J]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
L [auth J]IPR004000Actin familyFamily
M [auth K]IPR002189F-actin-capping protein subunit alphaFamily
M [auth K]IPR042489F-actin capping protein, alpha subunit, domain 1Homologous Superfamily
M [auth K]IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
M [auth K]IPR017865F-actin capping protein, alpha subunit, conserved siteConserved Site
M [auth K]IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
N [auth L]IPR019771F-actin capping protein, beta subunit, conserved siteConserved Site
N [auth L]IPR001698F-actin-capping protein subunit betaFamily
N [auth L]IPR043175F-actin-capping protein subunit beta, N-terminal domainHomologous Superfamily
N [auth L]IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
N [auth L]IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
O [auth M],
P [auth N],
R [auth P],
S [auth Q],
V
IPR028133DynamitinFamily
Q [auth O],
T [auth R]
IPR009991Dynactin subunit 3Family
IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
IPR027777Dynactin subunit 6Family
IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
IPR047125Dynactin subunit 5Family
X [auth Y]IPR008603Dynactin subunit 4Family
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR026983Dynein heavy chainFamily
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR013602Dynein heavy chain, linkerDomain
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR041658Dynein heavy chain AAA lid domainDomain
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR041228Dynein heavy chain, C-terminal domainDomain
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR054354Dynein 2 heavy chain 1, cytoplasmic, ATPase lid domainDomain
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR003593AAA+ ATPase domainDomain
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR041466Dynein heavy chain, AAA 5 extension domainDomain
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR042219Dynein heavy chain AAA lid domain superfamilyHomologous Superfamily
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR024743Dynein heavy chain, coiled coil stalkDomain
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR013594Dynein heavy chain, tailDomain
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR004273Dynein heavy chain region D6 P-loop domainDomain
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
IPR024317Dynein heavy chain, AAA module D4Domain
CA [auth j],
GA [auth q],
JA [auth u]
IPR022780Dynein family light intermediate chainFamily
CA [auth j],
GA [auth q],
JA [auth u]
IPR008467Dynein 1 light intermediate chainFamily
CA [auth j],
GA [auth q],
JA [auth u]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
HA [auth s],
IA [auth t],
KA [auth w],
LA [auth z]
IPR016561Dynein light chain roadblock-type 1/2Family
HA [auth s],
IA [auth t],
KA [auth w],
LA [auth z]
IPR004942Roadblock/LAMTOR2 domainDomain
MA [auth S],
NA [auth T]
IPR000938CAP Gly-rich domainDomain
MA [auth S],
NA [auth T]
IPR036859CAP Gly-rich domain superfamilyHomologous Superfamily
MA [auth S],
NA [auth T]
IPR022157Dynein associated proteinDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth p],
AA [auth g],
BA [auth h],
FA [auth o]
PharosQ13409
B [auth 1],
C [auth 2]
PharosQ14980
DA [auth m],
EA [auth n],
Y [auth e],
Z [auth f]
PharosQ14204
CA [auth j],
GA [auth q],
JA [auth u]
PharosO43237
HA [auth s],
IA [auth t],
KA [auth w],
LA [auth z]
PharosQ9NP97