9HCJ | pdb_00009hcj

D. discoideum nuclear pore complex

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
EA [auth F0],
FA [auth F1],
GA [auth F2],
HA [auth F3]		PF05172Nup53/35/40-type RNA recognition motif (RRM_Nup35)Nup53/35/40-type RNA recognition motifMembers of this family belong to the nucleor pore complex, NPC, the only gateway between the nucleus and the cytoplasm. The NPC consists of several subcomplexes each one of which is made up of multiple copies of several individual Nup, Nic or Sec pro ...Members of this family belong to the nucleor pore complex, NPC, the only gateway between the nucleus and the cytoplasm. The NPC consists of several subcomplexes each one of which is made up of multiple copies of several individual Nup, Nic or Sec protein subunits. In yeast, this Nup or nucleoporin subunit is numbered Nup53, Nup40 in Schizo. pombe and in vertebrates as Nup35. This subunit forms part of the inner ring within the membrane and interacts directly with Nup-Ndc1, considered to be an anchor for the NPC in the pore membrane [1]. This region of the Nup is the RNA-recognition region [2].
Domain
AA [auth D2],
BA [auth D3],
Y [auth D0],
Z [auth D1]		PF03177Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C)Non-repetitive/WGA-negative nucleoporin C-terminal- Repeat
AA [auth D2],
BA [auth D3],
Y [auth D0],
Z [auth D1]		PF08801Nup133 N terminal like (Nucleoporin_N)Nup133 N terminal like- Repeat
PF04097Nup93/Nic96 (Nic96)Nup93/Nic96- Repeat
K [auth 40],
L [auth 41]		PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
MC [auth W0],
NC [auth W1]		PF10168Nuclear pore component (Nup88)Nuclear pore component- Repeat
AC [auth R2],
BC [auth R3],
YB [auth R0],
ZB [auth R1]		PF03100CcmE domain (CcmE)CcmE domainCcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final ...CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.
Domain
PF22962NUP210 Ig-like domain 7 (Ig_NUP210_7th)NUP210 Ig-like domain 7This domain is found in the homologues of Nuclear pore membrane glycoprotein 210 (NUP210). NUP210 is essential for nuclear pore assembly and fusion, nuclear pore spacing, as well as for its structural integrity. NUP210 is composed of multiple immunog ...This domain is found in the homologues of Nuclear pore membrane glycoprotein 210 (NUP210). NUP210 is essential for nuclear pore assembly and fusion, nuclear pore spacing, as well as for its structural integrity. NUP210 is composed of multiple immunoglobin-like (Ig-like) domains and forms a ring around the NPC within the NE lumen [1]. The domain represented by this entry is one of these constituent Ig-like domains and has a significant structural similarity to cadherin domains.
Domain
PF22967NUP210 Ig-like domain 1 (Ig_NUP210_1st)NUP210 Ig-like domain 1This domain is found in the homologues of human Nuclear pore membrane glycoprotein 210 (NUP210). NUP210 is essential for nuclear pore assembly and fusion, nuclear pore spacing, as well as for its structural integrity. NUP210 is composed of multiple i ...This domain is found in the homologues of human Nuclear pore membrane glycoprotein 210 (NUP210). NUP210 is essential for nuclear pore assembly and fusion, nuclear pore spacing, as well as for its structural integrity. NUP210 is composed of multiple immunoglobin-like (Ig-like) domains and forms a ring around the NPC within the NE lumen [1]. The domain represented by this entry is one of these constituent Ig-like domains and has a significant structural similarity to cadherin domains.
Domain
PF22959NUP210 Ig-like domain 15 (Ig_NUP210_15th)NUP210 Ig-like domain 15This domain is found in the homologues of Nuclear pore membrane glycoprotein 210 (NUP210). NUP210 is essential for nuclear pore assembly and fusion, nuclear pore spacing, as well as for its structural integrity. NUP210 is composed of multiple immunog ...This domain is found in the homologues of Nuclear pore membrane glycoprotein 210 (NUP210). NUP210 is essential for nuclear pore assembly and fusion, nuclear pore spacing, as well as for its structural integrity. NUP210 is composed of multiple immunoglobin-like (Ig-like) domains and forms a ring around the NPC within the NE lumen [1]. The domain represented by this entry is one of these constituent Ig-like domains and has a significant structural similarity to cadherin domains.
Domain
PF22969NUP210 Ig-like domain 2 (Ig_NUP210_2nd)NUP210 Ig-like domain 2This domain is found in the homologues of human Nuclear pore membrane glycoprotein 210 (NUP210). NUP210 is essential for nuclear pore assembly and fusion, nuclear pore spacing, as well as for its structural integrity. NUP210 is composed of multiple i ...This domain is found in the homologues of human Nuclear pore membrane glycoprotein 210 (NUP210). NUP210 is essential for nuclear pore assembly and fusion, nuclear pore spacing, as well as for its structural integrity. NUP210 is composed of multiple immunoglobin-like (Ig-like) domains and forms a ring around the NPC within the NE lumen [1]. The domain represented by this entry is one of these constituent Ig-like domains and has a significant structural similarity to cadherin domains.
Domain
PF22963NUP210 Ig-like domain 3 (Ig_NUP210_3rd)NUP210 Ig-like domain 3This domain is found in the homologues of human Nuclear pore membrane glycoprotein 210 (NUP210). NUP210 is essential for nuclear pore assembly and fusion, nuclear pore spacing, as well as for its structural integrity. NUP210 is composed of multiple i ...This domain is found in the homologues of human Nuclear pore membrane glycoprotein 210 (NUP210). NUP210 is essential for nuclear pore assembly and fusion, nuclear pore spacing, as well as for its structural integrity. NUP210 is composed of multiple immunoglobin-like (Ig-like) domains and forms a ring around the NPC within the NE lumen [1]. The domain represented by this entry is one of these constituent Ig-like domains and has a significant structural similarity to cadherin domains.
Domain
UB [auth Q0],
VB [auth Q1],
WB [auth Q2],
XB [auth Q3]		PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
QB [auth P0],
RB [auth P1],
SB [auth P2],
TB [auth P3]		PF07575Nup85 Nucleoporin (Nucleopor_Nup85)Nup85 Nucleoporin- Repeat
MB [auth O0],
NB [auth O1],
OB [auth O2],
PB [auth O3]		PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
IB [auth N0],
JB [auth N1],
KB [auth N2],
LB [auth N3]		PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
EB [auth M0],
FB [auth M1],
GB [auth M2],
HB [auth M3]		PF12110Nuclear protein 96 (Nup96)Nuclear protein 96Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the n ...Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex. [1] [2]
Domain
AB [auth L0],
BB [auth L1],
CB [auth L2],
DB [auth L3]		PF04121Nuclear pore protein 84 / 107 (Nup84_Nup100)Nuclear pore protein 84 / 107- Family
IA [auth H0],
JA [auth H1],
KA [auth H2],
LA [auth H3]		PF13874Nucleoporin complex subunit 54 (Nup54)Nucleoporin complex subunit 54- Coiled-coil

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
EA [auth F0],
FA [auth F1],
GA [auth F2],
HA [auth F3]		Nup35
CA [auth E0],
DA [auth E1]		NDC1- -
AA [auth D2],
BA [auth D3],
Y [auth D0],
Z [auth D1]		Nucleoporin 155
U [auth C0],
V [auth C1],
W [auth C2],
X [auth C3]		Nup205
S [auth B0],
T [auth B1]		Nup188 - -
Nuclear pore protein
K [auth 40],
L [auth 41]		WD40 repeat-containing protein-
OC [auth X0],
PC [auth X1],
QC [auth X2],
RC [auth X3]		Nup205- -
MC [auth W0],
NC [auth W1]		Nup88
KC [auth V0],
LC [auth V1]		WD40-like domain-containing protein
GC [auth U0],
HC [auth U1],
IC [auth U2],
JC [auth U3]		Nuclear pore complex protein Nup98-Nup96
CC [auth T0],
DC [auth T1],
EC [auth T2],
FC [auth T3]		ELYS-like domain-containing protein
AC [auth R2],
BC [auth R3],
YB [auth R0],
ZB [auth R1]		Nup160
Nucleoporin 210- -
UB [auth Q0],
VB [auth Q1],
WB [auth Q2],
XB [auth Q3]		Nuclear pore complex protein nup43-
QB [auth P0],
RB [auth P1],
SB [auth P2],
TB [auth P3]		Nuclear pore complex protein nup85
MB [auth O0],
NB [auth O1],
OB [auth O2],
PB [auth O3]		Seh1
IB [auth N0],
JB [auth N1],
KB [auth N2],
LB [auth N3]		Protein SEC13 homolog
EB [auth M0],
FB [auth M1],
GB [auth M2],
HB [auth M3]		Nuclear pore complex protein Nup98-Nup96
AB [auth L0],
BB [auth L1],
CB [auth L2],
DB [auth L3]		Nuclear pore complex protein
WA [auth K0],
XA [auth K1],
YA [auth K2],
ZA [auth K3]		Nucleoporin 133
Nuclear pore protein
MA [auth I0],
NA [auth I1],
OA [auth I2],
PA [auth I3]		Nup58
IA [auth H0],
JA [auth H1],
KA [auth H2],
LA [auth H3]		Nuclear pore complex protein nup54
A [auth 00],
B [auth 01]		RanBP2-type zinc finger -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
EA [auth F0],
FA [auth F1],
GA [auth F2],
HA [auth F3]		IPR007846RNA-recognition motif (RRM) Nup35-type domainDomain
EA [auth F0],
FA [auth F1],
GA [auth F2],
HA [auth F3]		IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
EA [auth F0],
FA [auth F1],
GA [auth F2],
HA [auth F3]		IPR035979RNA-binding domain superfamilyHomologous Superfamily
CA [auth E0],
DA [auth E1]		IPR051647Mediator complex subunit 12Family
AA [auth D2],
BA [auth D3],
Y [auth D0],
Z [auth D1]		IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
AA [auth D2],
BA [auth D3],
Y [auth D0],
Z [auth D1]		IPR004870Nucleoporin, Nup155-likeFamily
AA [auth D2],
BA [auth D3],
Y [auth D0],
Z [auth D1]		IPR042538Nucleoporin, Nup155-like, C-terminal, subdomain 3Homologous Superfamily
AA [auth D2],
BA [auth D3],
Y [auth D0],
Z [auth D1]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth D2],
BA [auth D3],
Y [auth D0],
Z [auth D1]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth D2],
BA [auth D3],
Y [auth D0],
Z [auth D1]		IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
U [auth C0],
V [auth C1],
W [auth C2],
X [auth C3]		IPR021827Nucleoporin Nup186/Nup192/Nup205Family
S [auth B0],
T [auth B1]		IPR011254Prismane-like superfamilyHomologous Superfamily
IPR007231Nucleoporin interacting component Nup93/Nic96Family
K [auth 40],
L [auth 41]		IPR045139AladinFamily
K [auth 40],
L [auth 41]		IPR001680WD40 repeatRepeat
K [auth 40],
L [auth 41]		IPR057403Aladin, seven-bladed propellerDomain
K [auth 40],
L [auth 41]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
K [auth 40],
L [auth 41]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OC [auth X0],
PC [auth X1],
QC [auth X2],
RC [auth X3]		IPR021827Nucleoporin Nup186/Nup192/Nup205Family
MC [auth W0],
NC [auth W1]		IPR037700Nucleoporin NUP88/NUP82Family
MC [auth W0],
NC [auth W1]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
MC [auth W0],
NC [auth W1]		IPR019321Nucleoporin Nup88Family
KC [auth V0],
LC [auth V1]		IPR027324Microtubule associated protein MAP2/MAP4/TauFamily
KC [auth V0],
LC [auth V1]		IPR014161Tol-Pal system, TolAFamily
GC [auth U0],
HC [auth U1],
IC [auth U2],
JC [auth U3]		IPR025574Nucleoporin FG repeatRepeat
GC [auth U0],
HC [auth U1],
IC [auth U2],
JC [auth U3]		IPR037665Nucleoporin peptidase S59-likeFamily
GC [auth U0],
HC [auth U1],
IC [auth U2],
JC [auth U3]		IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
GC [auth U0],
HC [auth U1],
IC [auth U2],
JC [auth U3]		IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
GC [auth U0],
HC [auth U1],
IC [auth U2],
JC [auth U3]		IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
CC [auth T0],
DC [auth T1],
EC [auth T2],
FC [auth T3]		IPR045154Protein PCF11-likeFamily
AC [auth R2],
BC [auth R3],
YB [auth R0],
ZB [auth R1]		IPR056535NUP160, middle TPR domainDomain
AC [auth R2],
BC [auth R3],
YB [auth R0],
ZB [auth R1]		IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AC [auth R2],
BC [auth R3],
YB [auth R0],
ZB [auth R1]		IPR036127CcmE-like superfamilyHomologous Superfamily
AC [auth R2],
BC [auth R3],
YB [auth R0],
ZB [auth R1]		IPR021717Nucleoporin Nup120/160Family
AC [auth R2],
BC [auth R3],
YB [auth R0],
ZB [auth R1]		IPR056536NUP160, C-terminal TPR domainDomain
AC [auth R2],
BC [auth R3],
YB [auth R0],
ZB [auth R1]		IPR056547NUP160, helical domainDomain
IPR045197Nuclear pore membrane glycoprotein 210-likeFamily
IPR055094NUP210, Ig-like domain 15Domain
IPR056897NUP210, fourth Ig-like domainDomain
IPR055096NUP210, Ig-like domain 1Domain
IPR056899NUP210, Ig-like domain 9Domain
IPR055098NUP210, Ig-like domain 3Domain
IPR003343Bacterial Ig-like domain, group 2Domain
IPR055097NUP210, Ig-like domain 2Domain
IPR055099NUP210, Ig-like domain 7Domain
IPR008964Invasin/intimin cell-adhesion fragmentsHomologous Superfamily
UB [auth Q0],
VB [auth Q1],
WB [auth Q2],
XB [auth Q3]		IPR001680WD40 repeatRepeat
UB [auth Q0],
VB [auth Q1],
WB [auth Q2],
XB [auth Q3]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
UB [auth Q0],
VB [auth Q1],
WB [auth Q2],
XB [auth Q3]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
QB [auth P0],
RB [auth P1],
SB [auth P2],
TB [auth P3]		IPR011502Nucleoporin Nup85-likeFamily
MB [auth O0],
NB [auth O1],
OB [auth O2],
PB [auth O3]		IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
MB [auth O0],
NB [auth O1],
OB [auth O2],
PB [auth O3]		IPR001680WD40 repeatRepeat
MB [auth O0],
NB [auth O1],
OB [auth O2],
PB [auth O3]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
MB [auth O0],
NB [auth O1],
OB [auth O2],
PB [auth O3]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
MB [auth O0],
NB [auth O1],
OB [auth O2],
PB [auth O3]		IPR037363Sec13/Seh1 familyFamily
IB [auth N0],
JB [auth N1],
KB [auth N2],
LB [auth N3]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IB [auth N0],
JB [auth N1],
KB [auth N2],
LB [auth N3]		IPR037363Sec13/Seh1 familyFamily
IB [auth N0],
JB [auth N1],
KB [auth N2],
LB [auth N3]		IPR001680WD40 repeatRepeat
IB [auth N0],
JB [auth N1],
KB [auth N2],
LB [auth N3]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EB [auth M0],
FB [auth M1],
GB [auth M2],
HB [auth M3]		IPR025574Nucleoporin FG repeatRepeat
EB [auth M0],
FB [auth M1],
GB [auth M2],
HB [auth M3]		IPR037665Nucleoporin peptidase S59-likeFamily
EB [auth M0],
FB [auth M1],
GB [auth M2],
HB [auth M3]		IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
EB [auth M0],
FB [auth M1],
GB [auth M2],
HB [auth M3]		IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
EB [auth M0],
FB [auth M1],
GB [auth M2],
HB [auth M3]		IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
AB [auth L0],
BB [auth L1],
CB [auth L2],
DB [auth L3]		IPR007252Nuclear pore protein 84/107Family
WA [auth K0],
XA [auth K1],
YA [auth K2],
ZA [auth K3]		IPR037624Nuclear pore complex protein Nup133-likeFamily
WA [auth K0],
XA [auth K1],
YA [auth K2],
ZA [auth K3]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR007758Nucleoporin, NSP1-like, C-terminalDomain
IPR025574Nucleoporin FG repeatRepeat
IPR026010Nucleoporin NSP1/NUP62Family
MA [auth I0],
NA [auth I1],
OA [auth I2],
PA [auth I3]		IPR025574Nucleoporin FG repeatRepeat
MA [auth I0],
NA [auth I1],
OA [auth I2],
PA [auth I3]		IPR024864Nucleoporin Nup54/Nup57/Nup44Family
IA [auth H0],
JA [auth H1],
KA [auth H2],
LA [auth H3]		IPR025712Nucleoporin Nup54, alpha-helical domainDomain
IA [auth H0],
JA [auth H1],
KA [auth H2],
LA [auth H3]		IPR025574Nucleoporin FG repeatRepeat
IA [auth H0],
JA [auth H1],
KA [auth H2],
LA [auth H3]		IPR024864Nucleoporin Nup54/Nup57/Nup44Family
A [auth 00],
B [auth 01]		IPR004944Cyclin-dependent kinase 5 activatorFamily
A [auth 00],
B [auth 01]		IPR001876Zinc finger, RanBP2-typeDomain
A [auth 00],
B [auth 01]		IPR011049Serralysin-like metalloprotease, C-terminalHomologous Superfamily