9HA6 | pdb_00009ha6

mature 50S subunit supplemented with Api137


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
G [auth C]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
G [auth C]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
H [auth D]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
I [auth E]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
J [auth F]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
K [auth G]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
K [auth G]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
L [auth H]SCOP2B SuperfamilyL9 N-domain-like 8032960 3000338 SCOP2B (2022-06-29)
L [auth H]SCOP2B SuperfamilyRibosomal protein L9 C-domain 8032958 3000329 SCOP2B (2022-06-29)
M [auth J]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
N [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
O [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
P [auth M]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
Q [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
R [auth O]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
S [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
T [auth Q]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
U [auth R]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
V [auth S]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
W [auth T]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
X [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
Y [auth V]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
Z [auth W]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
AA [auth X]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
BA [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
CA [auth Z]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
B [auth 1]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
C [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
D [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
E [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
G [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
G [auth C]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
H [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
I [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
J [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
J [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
K [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
L [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
L [auth H]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domainDomain
M [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
N [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
O [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
P [auth M]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
Q [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
R [auth O]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
S [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
T [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
U [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
V [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
W [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
X [auth U]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
X [auth U]PF00467KOW motif (KOW)KOW motif- Family
Y [auth V]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
Z [auth W]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
AA [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
BA [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
BA [auth Y]PF00807Apidaecin (Apidaecin)Apidaecin- Family
CA [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
CA [auth Z]PF00807Apidaecin (Apidaecin)Apidaecin- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]Large ribosomal subunit protein bL32
B [auth 1]Large ribosomal subunit protein bL33
C [auth 2]Large ribosomal subunit protein bL34
D [auth 3]Large ribosomal subunit protein bL35
E [auth 4]Large ribosomal subunit protein bL36A
F [auth B]5S ribosomal RNA---
G [auth C]Large ribosomal subunit protein uL2
H [auth D]50S ribosomal protein L3
I [auth E]Large ribosomal subunit protein uL4
J [auth F]Large ribosomal subunit protein uL5
K [auth G]Large ribosomal subunit protein uL6
L [auth H]Large ribosomal subunit protein bL9
M [auth J]Large ribosomal subunit protein uL13
N [auth K]Large ribosomal subunit protein uL14
O [auth L]Large ribosomal subunit protein uL15
P [auth M]50S ribosomal protein L16
Q [auth N]Large ribosomal subunit protein bL17
R [auth O]Large ribosomal subunit protein uL18
S [auth P]Large ribosomal subunit protein bL19
T [auth Q]Large ribosomal subunit protein bL20
U [auth R]Large ribosomal subunit protein bL21
V [auth S]Large ribosomal subunit protein uL22
W [auth T]Large ribosomal subunit protein uL23
X [auth U]Large ribosomal subunit protein uL24
Y [auth V]Large ribosomal subunit protein bL25
Z [auth W]Large ribosomal subunit protein bL27
AA [auth X]Large ribosomal subunit protein bL28
BA [auth Y]Large ribosomal subunit protein uL29
CA [auth Z]Large ribosomal subunit protein uL30
DA [auth A]23S ribosomal rRNA---
EA [auth z],
FA [auth y]
Apidaecins type 22-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0]IPR002677Large ribosomal subunit protein bL32Family
A [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
A [auth 0]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
B [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
B [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
B [auth 1]IPR001705Large ribosomal subunit protein bL33Family
B [auth 1]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
C [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
C [auth 2]IPR000271Large ribosomal subunit protein bL34Family
D [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
D [auth 3]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
D [auth 3]IPR001706Large ribosomal subunit protein bL35Family
D [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
E [auth 4]IPR000473Large ribosomal subunit protein bL36Family
E [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
G [auth C]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
G [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
G [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
G [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
G [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
G [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
G [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
G [auth C]IPR002171Large ribosomal subunit protein uL2Family
H [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
H [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
H [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
H [auth D]IPR000597Large ribosomal subunit protein uL3Family
I [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
I [auth E]IPR002136Large ribosomal subunit protein uL4Family
I [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
J [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
J [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
J [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
J [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
J [auth F]IPR002132Large ribosomal subunit protein uL5Family
J [auth F]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
K [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
K [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
K [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
K [auth G]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
K [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
L [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
L [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
L [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
L [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
L [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
L [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
L [auth H]IPR000244Large ribosomal subunit protein bL9Family
M [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
M [auth J]IPR005822Large ribosomal subunit protein uL13Family
M [auth J]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
M [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
N [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
N [auth K]IPR000218Large ribosomal subunit protein uL14Family
N [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
N [auth K]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
O [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
O [auth L]IPR030878Large ribosomal subunit protein uL15Family
O [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
O [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
O [auth L]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
P [auth M]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
P [auth M]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
P [auth M]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
P [auth M]IPR016180Large ribosomal subunit protein uL16 domainDomain
P [auth M]IPR047873Large ribosomal subunit protein uL16Family
Q [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
Q [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
Q [auth N]IPR000456Large ribosomal subunit protein bL17Family
R [auth O]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
R [auth O]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
S [auth P]IPR001857Large ribosomal subunit protein bL19Family
S [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
S [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
S [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth Q]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
T [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
T [auth Q]IPR005813Large ribosomal subunit protein bL20Family
U [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
U [auth R]IPR001787Large ribosomal subunit protein bL21Family
U [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
U [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
V [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
V [auth S]IPR001063Large ribosomal subunit protein uL22Family
V [auth S]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
V [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
V [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
W [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
W [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
W [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
X [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth U]IPR003256Large ribosomal subunit protein uL24Family
X [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
X [auth U]IPR005824KOWDomain
X [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
Y [auth V]IPR020055Ribosomal protein bL25, short-formFamily
Y [auth V]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
Y [auth V]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
Y [auth V]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
Y [auth V]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
Z [auth W]IPR001684Large ribosomal subunit protein bL27Family
Z [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
AA [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
AA [auth X]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
AA [auth X]IPR026569Large ribosomal subunit protein bL28Family
AA [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
BA [auth Y]IPR050063Universal ribosomal protein uL29Family
BA [auth Y]IPR001854Large ribosomal subunit protein uL29Family
BA [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
BA [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
CA [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
CA [auth Z]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
CA [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
CA [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
EA [auth z],
FA [auth y]
IPR004828ApidaecinRepeat