9H52 | pdb_00009h52

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth N]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
H [auth M]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
G [auth L]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
F [auth J]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
C [auth 9]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
C [auth 9]PF21516YqeH-like, C-terminal (YqeH-like_C)YqeH-like, C-terminalThis entry is found at the C-terminal of Nitric oxide-associated protein 1 (NOA1) from animals and rice, BPG2 from Arabidopsis and YqeH from B. subtilis. YqeH is an orthologue of NOA1. This domain has a beta-sandwich structure with homology to the RN ...This entry is found at the C-terminal of Nitric oxide-associated protein 1 (NOA1) from animals and rice, BPG2 from Arabidopsis and YqeH from B. subtilis. YqeH is an orthologue of NOA1. This domain has a beta-sandwich structure with homology to the RNA-binding regulator TRAP, and the hypoxia factor pVHL. The residues for RNA recognition in TRAP are conserved in members of this entry, suggesting that these are G-proteins that may regulate nucleic acid recognition [1].
Domain
CA [auth 5]PF00398Ribosomal RNA adenine dimethylase (RrnaAD)Ribosomal RNA adenine dimethylaseDomain
BA [auth 7]PF09243Mitochondrial small ribosomal subunit Rsm22 (Rsm22)Mitochondrial small ribosomal subunit Rsm22- Family
AA [auth 8]PF00698Acyl transferase domain (Acyl_transf_1)Acyl transferase domainDomain
Z [auth 4]PF13812Pentatricopeptide repeat domain (PPR_3)Pentatricopeptide repeat domain- Repeat
Z [auth 4]PF22330Small ribosomal subunit protein mS39, PPR (Rib_mS39_PPR)Small ribosomal subunit protein mS39, PPR- Repeat
Y [auth 1]PF10213Mitochondrial ribosomal subunit protein (MRP-S28)Mitochondrial ribosomal subunit protein- Family
W [auth X]PF10236Mitochondrial ribosomal death-associated protein 3 (DAP3)Mitochondrial ribosomal death-associated protein 3- Family
V [auth G]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
U [auth F]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
B [auth 0]PF16053Mitochondrial 28S ribosomal protein S34 (MRP-S34)Mitochondrial 28S ribosomal protein S34- Family
R [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
P [auth U]PF14943Mitochondrial ribosome subunit S26 (MRP-S26)Mitochondrial ribosome subunit S26- Family
O [auth T]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
N [auth S]PF10484Mitochondrial ribosomal protein S23 (MRP-S23)Mitochondrial ribosomal protein S23- Family
M [auth R]PF10245Mitochondrial 28S ribosomal protein S22 (MRP-S22)Mitochondrial 28S ribosomal protein S22- Family
K [auth P]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
J [auth O]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth N]28S ribosomal protein S17, mitochondrial
H [auth M]28S ribosomal protein S16, mitochondrial
G [auth L]28S ribosomal protein S15, mitochondrial
F [auth J]28S ribosomal protein S12, mitochondrial
28S ribosomal protein S6, mitochondrial
28S ribosomal protein S5, mitochondrial
DA [auth V]28S ribosomal protein S27, mitochondrial
C [auth 9]Nitric oxide-associated protein 1
CA [auth 5]Dimethyladenosine transferase 1, mitochondrial
BA [auth 7]Isoform 2 of Ribosome assembly protein METTL17, mitochondrial
AA [auth 8]Malonyl-CoA-acyl carrier protein transacylase, mitochondrial
Z [auth 4]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
Y [auth 1]28S ribosomal protein S35, mitochondrial
X [auth Y]28S ribosomal protein S31, mitochondrial
W [auth X]28S ribosomal protein S29, mitochondrial
V [auth G]28S ribosomal protein S9, mitochondrial
U [auth F]28S ribosomal protein S7, mitochondrial
T [auth C]28S ribosomal protein S24, mitochondrial
B [auth 0]Small ribosomal subunit protein mS34
S [auth W]28S ribosomal protein S28, mitochondrial
R [auth B]28S ribosomal protein S2, mitochondrial
Q [auth A]12S mitochondrial rRNA---
P [auth U]28S ribosomal protein S26, mitochondrial
O [auth T]28S ribosomal protein S25, mitochondrial
N [auth S]28S ribosomal protein S23, mitochondrial
M [auth R]28S ribosomal protein S22, mitochondrial
L [auth Q]MRPS21 isoform 1
K [auth P]28S ribosomal protein S18c, mitochondrial
J [auth O]28S ribosomal protein S18b, mitochondrial
A [auth a]GTPase Era, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth N]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
I [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth N]IPR000266Small ribosomal subunit protein uS17Family
H [auth M]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
H [auth M]IPR000307Small ribosomal subunit protein bS16Family
G [auth L]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
G [auth L]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
G [auth L]IPR052137Universal small ribosomal subunit uS15Family
G [auth L]IPR000589Small ribosomal subunit protein uS15Family
F [auth J]IPR006032Small ribosomal subunit protein uS12Family
F [auth J]IPR005679Ribosomal protein uS12, bacteriaFamily
F [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR000529Small ribosomal subunit protein bS6Family
IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
IPR000851Small ribosomal subunit protein uS5Family
IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
DA [auth V]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
DA [auth V]IPR002885Pentatricopeptide repeatRepeat
DA [auth V]IPR019266Small ribosomal subunit protein mS27Family
DA [auth V]IPR034913mS27/PTCD2Family
C [auth 9]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
C [auth 9]IPR052807Mitochondrial translation and respiration regulatorFamily
C [auth 9]IPR006073GTP binding domainDomain
C [auth 9]IPR048422NOA1/YqeH-like, C-terminal domainDomain
C [auth 9]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
CA [auth 5]IPR001737Ribosomal RNA adenine methyltransferase KsgA/ErmFamily
CA [auth 5]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
CA [auth 5]IPR020598Ribosomal RNA adenine methylase transferase, N-terminalDomain
CA [auth 5]IPR023165rRNA adenine dimethylase-like, C-terminalHomologous Superfamily
CA [auth 5]IPR011530Ribosomal RNA adenine dimethylaseFamily
CA [auth 5]IPR020596Ribosomal RNA adenine methylase transferase, conserved siteConserved Site
BA [auth 7]IPR015324Ribosomal protein Rsm22-likeFamily
BA [auth 7]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
BA [auth 7]IPR052571Mitochondrial RNA MethyltransferaseFamily
AA [auth 8]IPR016035Acyl transferase/acyl hydrolase/lysophospholipaseHomologous Superfamily
AA [auth 8]IPR052760Mitochondrial malonyltransferaseFamily
AA [auth 8]IPR001227Acyl transferase domain superfamilyHomologous Superfamily
AA [auth 8]IPR016036Malonyl-CoA ACP transacylase, ACP-bindingHomologous Superfamily
AA [auth 8]IPR014043Acyl transferase domainDomain
Z [auth 4]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
Z [auth 4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
Z [auth 4]IPR002885Pentatricopeptide repeatRepeat
Z [auth 4]IPR055063Small ribosomal subunit protein mS39, PPRRepeat
Y [auth 1]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
Y [auth 1]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
X [auth Y]IPR026299Mitochondrial 28S ribosomal protein S31Family
W [auth X]IPR019368Small ribosomal subunit protein mS29Family
W [auth X]IPR008092Small ribosomal subunit protein mS29, metazoaFamily
W [auth X]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
V [auth G]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
V [auth G]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
V [auth G]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
V [auth G]IPR000754Small ribosomal subunit protein uS9Family
V [auth G]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
U [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
U [auth F]IPR000235Small ribosomal subunit protein uS7Family
U [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
T [auth C]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
B [auth 0]IPR032053Small ribosomal subunit protein mS34Family
S [auth W]IPR019375Small ribosomal subunit protein bS1mFamily
R [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
R [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
R [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
R [auth B]IPR001865Small ribosomal subunit protein uS2Family
P [auth U]IPR026140Small ribosomal subunit protein mS26Family
O [auth T]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
O [auth T]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
O [auth T]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
N [auth S]IPR059242Small ribosomal subunit protein mS23, conserved domainDomain
N [auth S]IPR019520Small ribosomal subunit protein mS23, metazoaFamily
N [auth S]IPR023611Small ribosomal subunit protein mS23, conserved domain, metazoaDomain
M [auth R]IPR019374Small ribosomal subunit protein mS22Family
L [auth Q]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
L [auth Q]IPR001911Small ribosomal subunit protein bS21Family
K [auth P]IPR001648Small ribosomal subunit protein bS18Family
K [auth P]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
K [auth P]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
J [auth O]IPR040054Small ribosomal subunit protein mS40Family
J [auth O]IPR001648Small ribosomal subunit protein bS18Family
J [auth O]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
A [auth a]IPR005225Small GTP-binding domainDomain
A [auth a]IPR030388Era-type guanine nucleotide-binding (G) domainDomain
A [auth a]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
A [auth a]IPR005662GTPase Era-likeFamily
A [auth a]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
A [auth a]IPR006073GTP binding domainDomain
A [auth a]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth N]Q9Y2R5
H [auth M]Q9Y3D3
G [auth L]P82914
F [auth J]O15235
P82932
P82675
DA [auth V]Q92552
C [auth 9]Q8NC60
CA [auth 5]Q8WVM0
BA [auth 7]Q9H7H0
AA [auth 8]Q8IVS2
Z [auth 4]Q96EY7
Y [auth 1]P82673
X [auth Y]Q92665
W [auth X]P51398
V [auth G]P82933
U [auth F]Q9Y2R9
B [auth 0]P82930
S [auth W]Q9Y2Q9
R [auth B]Q9Y399
O [auth T]P82663
N [auth S]Q9Y3D9
M [auth R]P82650
K [auth P]Q9Y3D5
J [auth O]Q9Y676
A [auth a]O75616

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
L [auth Q]ACE AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

:  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359