9H22 | pdb_00009h22

Cryo EM structure of RC-dLH complex model II from Gemmatimonas groenlandica

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth M]	Reaction center protein M chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	cellular anatomical structure endomembrane system membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cellular anatomical structure endomembrane system membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
AC [auth Am], CB [auth Aa], CC [auth An], EB [auth Ab], EC [auth Ao], AC [auth Am], CB [auth Aa], CC [auth An], EB [auth Ab], EC [auth Ao], GB [auth Ac], GC [auth Ap], IB [auth Ad], KB [auth Ae], MB [auth Af], OB [auth Ag], QB [auth Ah], SB [auth Ai], UB [auth Aj], WB [auth Ak], YB [auth Al]	Light-harvesting protein	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle
BA [auth BK], BB [auth BX], BC [auth Bm], DA [auth BL], DB [auth Ba], BA [auth BK], BB [auth BX], BC [auth Bm], DA [auth BL], DB [auth Ba], DC [auth Bn], FA [auth BM], FB [auth Bb], FC [auth Bo], GA [auth BN], H [auth BA], HB [auth Bc], HC [auth Bp], I [auth BB], JA [auth BO], JB [auth Bd], KA [auth BP], L [auth BC], LB [auth Be], M [auth BD], NA [auth BQ], NB [auth Bf], OA [auth BR], P [auth BE], PB [auth Bg], Q [auth BF], QA [auth BS], RB [auth Bh], SA [auth BT], T [auth BG], TB [auth Bi], UA [auth BU], V [auth BH], VB [auth Bj], X [auth BI], XA [auth BV], XB [auth Bk], Z [auth BJ], ZA [auth BW], ZB [auth Bl]	Light-harvesting protein	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
AA [auth AK], AB [auth AX], CA [auth AL], EA [auth AM], G [auth AA], AA [auth AK], AB [auth AX], CA [auth AL], EA [auth AM], G [auth AA], HA [auth AN], IA [auth AO], J [auth AB], K [auth AC], LA [auth AP], MA [auth AQ], N [auth AD], O [auth AE], PA [auth AR], R [auth AF], RA [auth AS], S [auth AG], TA [auth AT], U [auth AH], VA [auth AU], W [auth AI], WA [auth AV], Y [auth AJ], YA [auth AW]	Light-harvesting protein	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
F [auth C]	Photosynthetic reaction center cytochrome c subunit	binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle
E [auth K]	reaction centre Hc sub unit	-	-	-
D [auth H]	reaction centre Ht su unit	-	-	-
B [auth L]	Reaction center protein L chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	cellular anatomical structure endomembrane system membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cellular anatomical structure endomembrane system membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
A [auth S]	reaction centre S sub unit	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth M]	IPR036854	Photosystem II protein D1/D2 superfamily	Homologous Superfamily
C [auth M]	IPR005781	Photosynthetic reaction centre, M subunit	Family
C [auth M]	IPR000484	Photosynthetic reaction centre, L/M	Family
C [auth M]	IPR055265	Photosynthetic reaction centre, L/M, conserved site	Conserved Site
AC [auth Am], CB [auth Aa], CC [auth An], EB [auth Ab], EC [auth Ao], AC [auth Am], CB [auth Aa], CC [auth An], EB [auth Ab], EC [auth Ao], GB [auth Ac], GC [auth Ap], IB [auth Ad], KB [auth Ae], MB [auth Af], OB [auth Ag], QB [auth Ah], SB [auth Ai], UB [auth Aj], WB [auth Ak], YB [auth Al]	IPR000066	Antenna complex, alpha/beta subunit	Domain
AC [auth Am], CB [auth Aa], CC [auth An], EB [auth Ab], EC [auth Ao], AC [auth Am], CB [auth Aa], CC [auth An], EB [auth Ab], EC [auth Ao], GB [auth Ac], GC [auth Ap], IB [auth Ad], KB [auth Ae], MB [auth Af], OB [auth Ag], QB [auth Ah], SB [auth Ai], UB [auth Aj], WB [auth Ak], YB [auth Al]	IPR018332	Antenna complex, alpha subunit	Family
AC [auth Am], CB [auth Aa], CC [auth An], EB [auth Ab], EC [auth Ao], AC [auth Am], CB [auth Aa], CC [auth An], EB [auth Ab], EC [auth Ao], GB [auth Ac], GC [auth Ap], IB [auth Ad], KB [auth Ae], MB [auth Af], OB [auth Ag], QB [auth Ah], SB [auth Ai], UB [auth Aj], WB [auth Ak], YB [auth Al]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
AC [auth Am], CB [auth Aa], CC [auth An], EB [auth Ab], EC [auth Ao], AC [auth Am], CB [auth Aa], CC [auth An], EB [auth Ab], EC [auth Ao], GB [auth Ac], GC [auth Ap], IB [auth Ad], KB [auth Ae], MB [auth Af], OB [auth Ag], QB [auth Ah], SB [auth Ai], UB [auth Aj], WB [auth Ak], YB [auth Al]	IPR035889	Light-harvesting complex	Homologous Superfamily
BA [auth BK], BB [auth BX], BC [auth Bm], DA [auth BL], DB [auth Ba], BA [auth BK], BB [auth BX], BC [auth Bm], DA [auth BL], DB [auth Ba], DC [auth Bn], FA [auth BM], FB [auth Bb], FC [auth Bo], GA [auth BN], H [auth BA], HB [auth Bc], HC [auth Bp], I [auth BB], JA [auth BO], JB [auth Bd], KA [auth BP], L [auth BC], LB [auth Be], M [auth BD], NA [auth BQ], NB [auth Bf], OA [auth BR], P [auth BE], PB [auth Bg], Q [auth BF], QA [auth BS], RB [auth Bh], SA [auth BT], T [auth BG], TB [auth Bi], UA [auth BU], V [auth BH], VB [auth Bj], X [auth BI], XA [auth BV], XB [auth Bk], Z [auth BJ], ZA [auth BW], ZB [auth Bl]	IPR000066	Antenna complex, alpha/beta subunit	Domain
BA [auth BK], BB [auth BX], BC [auth Bm], DA [auth BL], DB [auth Ba], BA [auth BK], BB [auth BX], BC [auth Bm], DA [auth BL], DB [auth Ba], DC [auth Bn], FA [auth BM], FB [auth Bb], FC [auth Bo], GA [auth BN], H [auth BA], HB [auth Bc], HC [auth Bp], I [auth BB], JA [auth BO], JB [auth Bd], KA [auth BP], L [auth BC], LB [auth Be], M [auth BD], NA [auth BQ], NB [auth Bf], OA [auth BR], P [auth BE], PB [auth Bg], Q [auth BF], QA [auth BS], RB [auth Bh], SA [auth BT], T [auth BG], TB [auth Bi], UA [auth BU], V [auth BH], VB [auth Bj], X [auth BI], XA [auth BV], XB [auth Bk], Z [auth BJ], ZA [auth BW], ZB [auth Bl]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
BA [auth BK], BB [auth BX], BC [auth Bm], DA [auth BL], DB [auth Ba], BA [auth BK], BB [auth BX], BC [auth Bm], DA [auth BL], DB [auth Ba], DC [auth Bn], FA [auth BM], FB [auth Bb], FC [auth Bo], GA [auth BN], H [auth BA], HB [auth Bc], HC [auth Bp], I [auth BB], JA [auth BO], JB [auth Bd], KA [auth BP], L [auth BC], LB [auth Be], M [auth BD], NA [auth BQ], NB [auth Bf], OA [auth BR], P [auth BE], PB [auth Bg], Q [auth BF], QA [auth BS], RB [auth Bh], SA [auth BT], T [auth BG], TB [auth Bi], UA [auth BU], V [auth BH], VB [auth Bj], X [auth BI], XA [auth BV], XB [auth Bk], Z [auth BJ], ZA [auth BW], ZB [auth Bl]	IPR035889	Light-harvesting complex	Homologous Superfamily
BA [auth BK], BB [auth BX], BC [auth Bm], DA [auth BL], DB [auth Ba], BA [auth BK], BB [auth BX], BC [auth Bm], DA [auth BL], DB [auth Ba], DC [auth Bn], FA [auth BM], FB [auth Bb], FC [auth Bo], GA [auth BN], H [auth BA], HB [auth Bc], HC [auth Bp], I [auth BB], JA [auth BO], JB [auth Bd], KA [auth BP], L [auth BC], LB [auth Be], M [auth BD], NA [auth BQ], NB [auth Bf], OA [auth BR], P [auth BE], PB [auth Bg], Q [auth BF], QA [auth BS], RB [auth Bh], SA [auth BT], T [auth BG], TB [auth Bi], UA [auth BU], V [auth BH], VB [auth Bj], X [auth BI], XA [auth BV], XB [auth Bk], Z [auth BJ], ZA [auth BW], ZB [auth Bl]	IPR023623	Antenna complex, beta subunit, conserved site	Conserved Site
BA [auth BK], BB [auth BX], BC [auth Bm], DA [auth BL], DB [auth Ba], BA [auth BK], BB [auth BX], BC [auth Bm], DA [auth BL], DB [auth Ba], DC [auth Bn], FA [auth BM], FB [auth Bb], FC [auth Bo], GA [auth BN], H [auth BA], HB [auth Bc], HC [auth Bp], I [auth BB], JA [auth BO], JB [auth Bd], KA [auth BP], L [auth BC], LB [auth Be], M [auth BD], NA [auth BQ], NB [auth Bf], OA [auth BR], P [auth BE], PB [auth Bg], Q [auth BF], QA [auth BS], RB [auth Bh], SA [auth BT], T [auth BG], TB [auth Bi], UA [auth BU], V [auth BH], VB [auth Bj], X [auth BI], XA [auth BV], XB [auth Bk], Z [auth BJ], ZA [auth BW], ZB [auth Bl]	IPR002362	Light-harvesting protein B beta chain	Family
AA [auth AK], AB [auth AX], CA [auth AL], EA [auth AM], G [auth AA], AA [auth AK], AB [auth AX], CA [auth AL], EA [auth AM], G [auth AA], HA [auth AN], IA [auth AO], J [auth AB], K [auth AC], LA [auth AP], MA [auth AQ], N [auth AD], O [auth AE], PA [auth AR], R [auth AF], RA [auth AS], S [auth AG], TA [auth AT], U [auth AH], VA [auth AU], W [auth AI], WA [auth AV], Y [auth AJ], YA [auth AW]	IPR000066	Antenna complex, alpha/beta subunit	Domain
AA [auth AK], AB [auth AX], CA [auth AL], EA [auth AM], G [auth AA], AA [auth AK], AB [auth AX], CA [auth AL], EA [auth AM], G [auth AA], HA [auth AN], IA [auth AO], J [auth AB], K [auth AC], LA [auth AP], MA [auth AQ], N [auth AD], O [auth AE], PA [auth AR], R [auth AF], RA [auth AS], S [auth AG], TA [auth AT], U [auth AH], VA [auth AU], W [auth AI], WA [auth AV], Y [auth AJ], YA [auth AW]	IPR018332	Antenna complex, alpha subunit	Family
AA [auth AK], AB [auth AX], CA [auth AL], EA [auth AM], G [auth AA], AA [auth AK], AB [auth AX], CA [auth AL], EA [auth AM], G [auth AA], HA [auth AN], IA [auth AO], J [auth AB], K [auth AC], LA [auth AP], MA [auth AQ], N [auth AD], O [auth AE], PA [auth AR], R [auth AF], RA [auth AS], S [auth AG], TA [auth AT], U [auth AH], VA [auth AU], W [auth AI], WA [auth AV], Y [auth AJ], YA [auth AW]	IPR035889	Light-harvesting complex	Homologous Superfamily
F [auth C]	IPR036280	Multiheme cytochrome superfamily	Homologous Superfamily
F [auth C]	IPR023119	Multihaem cytochrome, PRC subunit superfamily	Homologous Superfamily
F [auth C]	IPR003158	Photosynthetic reaction centre, cytochrome c subunit	Family
B [auth L]	IPR036854	Photosystem II protein D1/D2 superfamily	Homologous Superfamily
B [auth L]	IPR000484	Photosynthetic reaction centre, L/M	Family
B [auth L]	IPR055265	Photosynthetic reaction centre, L/M, conserved site	Conserved Site
B [auth L]	IPR005871	Photosynthetic reaction centre, L subunit	Family