9GFT | pdb_00009gft

Structure of the HrpA-bound E. coli disome, Class I


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
RB [auth F]SCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
Y [auth AL]SCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
GA [auth AT]SCOP2B SuperfamilyL28p-like 8032740 3001966 SCOP2B (2022-06-29)
XB [auth L]SCOP2B SuperfamilyL28p-like 8032740 3001966 SCOP2B (2022-06-29)
KA [auth AX]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
KA [auth AX]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
BC [auth P]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
BC [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
MA [auth AZ]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
DC [auth R]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
OA [auth Ab]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
OA [auth Ab]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
FC [auth T]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
FC [auth T]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
JC [auth X]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
SA [auth Af]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
KC [auth Y]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
TA [auth Ag]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
UA [auth Ah]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
LC [auth Z]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
NC [auth b]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
WA [auth Aj]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
PC [auth d]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
YA [auth Al]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
VC [auth j]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
EB [auth Ar]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
GB [auth At]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
XC [auth l]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
YC [auth m]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
HB [auth Au]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
AD [auth o]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
JB [auth Aw]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
DD [auth r]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
MB [auth Az]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
PB [auth D]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
KD [auth y]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
QB [auth E]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
LD [auth z]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
I [auth 8]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)
V [auth AI]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)
H [auth 7]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
U [auth AH]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
T [auth AG]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)
ZC [auth n]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
F [auth 5]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
S [auth AF]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
LB [auth Ay]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
CD [auth q]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
IB [auth Av]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
WC [auth k]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
FB [auth As]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
DB [auth Aq]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
UC [auth i]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
CB [auth Ap]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
TC [auth h]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
BB [auth Ao]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
SC [auth g]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
AB [auth An]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
RC [auth f]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
QC [auth e]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
ZA [auth Am]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
OC [auth c]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
XA [auth Ak]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
Q [auth AD]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
VA [auth Ai]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
MC [auth a]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
RA [auth Ae]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
IC [auth W]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
HC [auth V]SCOP2B SuperfamilyRibosomal protein L11, C-terminal domain 8032961 3001186 SCOP2B (2022-06-29)
HC [auth V]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like 8032963 3000950 SCOP2B (2022-06-29)
QA [auth Ad]SCOP2B SuperfamilyRibosomal protein L11, C-terminal domain 8032961 3001186 SCOP2B (2022-06-29)
QA [auth Ad]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like 8032963 3000950 SCOP2B (2022-06-29)
PA [auth Ac]SCOP2B SuperfamilyL9 N-domain-like 8032960 3000338 SCOP2B (2022-06-29)
PA [auth Ac]SCOP2B SuperfamilyRibosomal protein L9 C-domain 8032958 3000329 SCOP2B (2022-06-29)
GC [auth U]SCOP2B SuperfamilyRibosomal protein L9 C-domain 8032958 3000329 SCOP2B (2022-06-29)
GC [auth U]SCOP2B SuperfamilyL9 N-domain-like 8032960 3000338 SCOP2B (2022-06-29)
EC [auth S]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
NA [auth Aa]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
LA [auth AY]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
CC [auth Q]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
FD [auth t]SCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
EA [auth AR]SCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
O [auth AB]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)
VB [auth J]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
CA [auth AP]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
BA [auth AO]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
UB [auth I]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
TB [auth H]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
AA [auth AN]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
Z [auth AM]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
SB [auth G]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
HD [auth v]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
L [auth A1]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
J [auth 9]SCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)
W [auth AJ]SCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 0],
N [auth AA]
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
A [auth 0],
N [auth AA]
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
E [auth 4],
R [auth AE]
PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
E [auth 4],
R [auth AE]
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
E [auth 4],
R [auth AE]
PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
K [auth A]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
OB [auth C],
X [auth AK]
PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
OB [auth C],
X [auth AK]
PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
RB [auth F],
Y [auth AL]
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
RB [auth F],
Y [auth AL]
PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
RB [auth F],
Y [auth AL]
PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
DA [auth AQ],
WB [auth K]
PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
DA [auth AQ],
WB [auth K]
PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
DA [auth AQ],
WB [auth K]
PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
GA [auth AT],
XB [auth L]
PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
GA [auth AT],
XB [auth L]
PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
BC [auth P],
KA [auth AX]
PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
BC [auth P],
KA [auth AX]
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
BC [auth P],
KA [auth AX]
PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
DC [auth R],
MA [auth AZ]
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
DC [auth R],
MA [auth AZ]
PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
FC [auth T],
OA [auth Ab]
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
JC [auth X],
SA [auth Af]
PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
JC [auth X],
SA [auth Af]
PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
KC [auth Y],
TA [auth Ag]
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
KC [auth Y],
TA [auth Ag]
PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
LC [auth Z],
UA [auth Ah]
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
LC [auth Z],
UA [auth Ah]
PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
KD [auth y],
PB [auth D]
PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
KD [auth y],
PB [auth D]
PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
LD [auth z],
QB [auth E]
PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
LD [auth z],
QB [auth E]
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
I [auth 8],
V [auth AI]
PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
I [auth 8],
V [auth AI]
PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
H [auth 7],
U [auth AH]
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
H [auth 7],
U [auth AH]
PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
G [auth 6],
T [auth AG]
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
F [auth 5],
S [auth AF]
PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
F [auth 5],
S [auth AF]
PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
YB [auth M]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
NB [auth B]PF04408Helicase associated domain (HA2), winged-helix (WHD_HA2)Helicase associated domain (HA2), winged-helixThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate wit ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3] and assure its correct function. This entry represents the WH domain, which connects the N- (RecA domains) and C-terminal domains (ratchet-like and OB-fold) of helicases.
Domain
NB [auth B]PF07717Oligonucleotide/oligosaccharide-binding (OB)-fold (OB_NTP_bind)Oligonucleotide/oligosaccharide-binding (OB)-foldThis family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss: ...This family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss:Q84VZ2. The structure PDB:3i4u adopts an OB-fold. helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins [1].
Domain
NB [auth B]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
NB [auth B]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
NB [auth B]PF21010Helicase associated domain (HA2), ratchet-like (HA2_C)Helicase associated domain (HA2), ratchet-likeThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains c ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with the RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3]. This entry represents the ratchet-like domain, which may be important for RNA translocation [1,2].
Domain
NB [auth B]PF11898Domain of unknown function (DUF3418) (DUF3418)Domain of unknown function (DUF3418)- Family
D [auth 3],
Q [auth AD]
PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
D [auth 3],
Q [auth AD]
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
D [auth 3],
Q [auth AD]
PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
D [auth 3],
Q [auth AD]
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
IC [auth W],
RA [auth Ae]
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
HC [auth V],
QA [auth Ad]
PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
HC [auth V],
QA [auth Ad]
PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
HC [auth V],
QA [auth Ad]
PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
GC [auth U],
PA [auth Ac]
PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
GC [auth U],
PA [auth Ac]
PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domainDomain
EC [auth S],
NA [auth Aa]
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
EC [auth S],
NA [auth Aa]
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
C [auth 2],
P [auth AC]
PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
C [auth 2],
P [auth AC]
PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domainDomain
C [auth 2],
P [auth AC]
PF07650KH domain (KH_2)KH domainDomain
C [auth 2],
P [auth AC]
PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
CC [auth Q],
LA [auth AY]
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
CC [auth Q],
LA [auth AY]
PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
AC [auth O],
JA [auth AW]
PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
IA [auth AV],
ZB [auth N]
PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
HA [auth AU]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
FA [auth AS],
GD [auth u]
PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
B [auth 1],
O [auth AB]
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
B [auth 1],
O [auth AB]
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
CA [auth AP],
VB [auth J]
PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
CA [auth AP],
VB [auth J]
PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
CA [auth AP],
VB [auth J]
PF00467KOW motif (KOW)KOW motif- Family
BA [auth AO],
UB [auth I]
PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
BA [auth AO],
UB [auth I]
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
BA [auth AO],
UB [auth I]
PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
AA [auth AN],
TB [auth H]
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
AA [auth AN],
TB [auth H]
PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
AA [auth AN],
TB [auth H]
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
AA [auth AN],
TB [auth H]
PF00467KOW motif (KOW)KOW motif- Family
SB [auth G],
Z [auth AM]
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
SB [auth G],
Z [auth AM]
PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
SB [auth G],
Z [auth AM]
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
HD [auth v],
L [auth A1]
PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
J [auth 9],
W [auth AJ]
PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0],
N [auth AA]
16S ribosomal RNA---
E [auth 4],
R [auth AE]
Small ribosomal subunit protein uS5
K [auth A]A-site tRNA---
M [auth A3]A-site tRNA---
OB [auth C],
X [auth AK]
Large ribosomal subunit protein uL1
RB [auth F],
Y [auth AL]
Small ribosomal subunit protein uS13
DA [auth AQ],
WB [auth K]
Small ribosomal subunit protein bS18
GA [auth AT],
XB [auth L]
Large ribosomal subunit protein bL31A
BC [auth P],
KA [auth AX]
Large ribosomal subunit protein uL2
DC [auth R],
MA [auth AZ]
Large ribosomal subunit protein uL4
FC [auth T],
OA [auth Ab]
Large ribosomal subunit protein uL6
JC [auth X],
SA [auth Af]
Large ribosomal subunit protein uL14
KC [auth Y],
TA [auth Ag]
Large ribosomal subunit protein uL15
LC [auth Z],
UA [auth Ah]
50S ribosomal protein L16
NC [auth b],
WA [auth Aj]
Large ribosomal subunit protein uL18
PC [auth d],
YA [auth Al]
Large ribosomal subunit protein bL20
EB [auth Ar],
VC [auth j]
Large ribosomal subunit protein bL27
GB [auth At],
XC [auth l]
Large ribosomal subunit protein uL29
HB [auth Au],
YC [auth m]
Large ribosomal subunit protein uL30
AD [auth o],
JB [auth Aw]
Large ribosomal subunit protein bL33
DD [auth r],
MB [auth Az]
Large ribosomal subunit protein bL36A
KD [auth y],
PB [auth D]
Small ribosomal subunit protein uS11
LD [auth z],
QB [auth E]
Small ribosomal subunit protein uS12
ID [auth w]messenger RNA---
I [auth 8],
V [auth AI]
Small ribosomal subunit protein uS9
H [auth 7],
U [auth AH]
Small ribosomal subunit protein uS8
G [auth 6],
T [auth AG]
Small ribosomal subunit protein uS7
JD [auth x]Large ribosomal subunit protein uL10
ED [auth s]VemP nascent chain- - -
ZC [auth n]Large ribosomal subunit protein bL32
F [auth 5],
S [auth AF]
Small ribosomal subunit protein bS6, fully modified isoform
YB [auth M]P-site tRNA---
NB [auth B]ATP-dependent RNA helicase HrpA -
CD [auth q],
LB [auth Ay]
Large ribosomal subunit protein bL35
BD [auth p],
KB [auth Ax]
Large ribosomal subunit protein bL34
IB [auth Av]Large ribosomal subunit protein bL32
FB [auth As],
WC [auth k]
Large ribosomal subunit protein bL28
DB [auth Aq],
UC [auth i]
Large ribosomal subunit protein bL25
CB [auth Ap],
TC [auth h]
Large ribosomal subunit protein uL24
BB [auth Ao],
SC [auth g]
Large ribosomal subunit protein uL23
AB [auth An],
RC [auth f]
Large ribosomal subunit protein uL22
QC [auth e],
ZA [auth Am]
Large ribosomal subunit protein bL21
OC [auth c],
XA [auth Ak]
Large ribosomal subunit protein bL19
D [auth 3],
Q [auth AD]
Small ribosomal subunit protein uS4
MC [auth a],
VA [auth Ai]
Large ribosomal subunit protein bL17
IC [auth W],
RA [auth Ae]
Large ribosomal subunit protein uL13
HC [auth V],
QA [auth Ad]
50S ribosomal protein L11
GC [auth U],
PA [auth Ac]
Large ribosomal subunit protein bL9
EC [auth S],
NA [auth Aa]
Large ribosomal subunit protein uL5
C [auth 2],
P [auth AC]
Small ribosomal subunit protein uS3
CC [auth Q],
LA [auth AY]
50S ribosomal protein L3
AC [auth O],
JA [auth AW]
5S ribosomal RNA---
IA [auth AV],
ZB [auth N]
23S RNA---
HA [auth AU]P-site tRNA---
FA [auth AS],
GD [auth u]
Small ribosomal subunit protein bS20
EA [auth AR],
FD [auth t]
Small ribosomal subunit protein uS19
B [auth 1],
O [auth AB]
Small ribosomal subunit protein uS2
CA [auth AP],
VB [auth J]
Small ribosomal subunit protein uS17
BA [auth AO],
UB [auth I]
Small ribosomal subunit protein bS16
AA [auth AN],
TB [auth H]
Small ribosomal subunit protein uS15
SB [auth G],
Z [auth AM]
Small ribosomal subunit protein uS14
HD [auth v],
L [auth A1]
Small ribosomal subunit protein bS21
J [auth 9],
W [auth AJ]
Small ribosomal subunit protein uS10

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth 4],
R [auth AE]
IPR000851Small ribosomal subunit protein uS5Family
E [auth 4],
R [auth AE]
IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth 4],
R [auth AE]
IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
E [auth 4],
R [auth AE]
IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth 4],
R [auth AE]
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth 4],
R [auth AE]
IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth 4],
R [auth AE]
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
OB [auth C],
X [auth AK]
IPR005878Large ribosomal subunit protein uL1, bacteriaFamily
OB [auth C],
X [auth AK]
IPR023674Ribosomal protein uL1-likeHomologous Superfamily
OB [auth C],
X [auth AK]
IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
OB [auth C],
X [auth AK]
IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
OB [auth C],
X [auth AK]
IPR002143Large ribosomal subunit protein uL1Family
OB [auth C],
X [auth AK]
IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
RB [auth F],
Y [auth AL]
IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
RB [auth F],
Y [auth AL]
IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
RB [auth F],
Y [auth AL]
IPR001892Small ribosomal subunit protein uS13Family
RB [auth F],
Y [auth AL]
IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
RB [auth F],
Y [auth AL]
IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
DA [auth AQ],
WB [auth K]
IPR001648Small ribosomal subunit protein bS18Family
DA [auth AQ],
WB [auth K]
IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
DA [auth AQ],
WB [auth K]
IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
GA [auth AT],
XB [auth L]
IPR002150Large ribosomal subunit protein bL31 type A/BFamily
GA [auth AT],
XB [auth L]
IPR027491Large ribosomal subunit protein bL31 type AFamily
GA [auth AT],
XB [auth L]
IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
GA [auth AT],
XB [auth L]
IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
BC [auth P],
KA [auth AX]
IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
BC [auth P],
KA [auth AX]
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
BC [auth P],
KA [auth AX]
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BC [auth P],
KA [auth AX]
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BC [auth P],
KA [auth AX]
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
BC [auth P],
KA [auth AX]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BC [auth P],
KA [auth AX]
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
BC [auth P],
KA [auth AX]
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
BC [auth P],
KA [auth AX]
IPR002171Large ribosomal subunit protein uL2Family
DC [auth R],
MA [auth AZ]
IPR013005Large ribosomal subunit protein uL4-likeFamily
DC [auth R],
MA [auth AZ]
IPR002136Large ribosomal subunit protein uL4Family
DC [auth R],
MA [auth AZ]
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
FC [auth T],
OA [auth Ab]
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
FC [auth T],
OA [auth Ab]
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
FC [auth T],
OA [auth Ab]
IPR000702Large ribosomal subunit protein uL6-likeFamily
FC [auth T],
OA [auth Ab]
IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
FC [auth T],
OA [auth Ab]
IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
JC [auth X],
SA [auth Af]
IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
JC [auth X],
SA [auth Af]
IPR000218Large ribosomal subunit protein uL14Family
JC [auth X],
SA [auth Af]
IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
JC [auth X],
SA [auth Af]
IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
KC [auth Y],
TA [auth Ag]
IPR021131Large ribosomal subunit protein uL15/eL18Domain
KC [auth Y],
TA [auth Ag]
IPR030878Large ribosomal subunit protein uL15Family
KC [auth Y],
TA [auth Ag]
IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
KC [auth Y],
TA [auth Ag]
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
KC [auth Y],
TA [auth Ag]
IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
LC [auth Z],
UA [auth Ah]
IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
LC [auth Z],
UA [auth Ah]
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
LC [auth Z],
UA [auth Ah]
IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
LC [auth Z],
UA [auth Ah]
IPR016180Large ribosomal subunit protein uL16 domainDomain
LC [auth Z],
UA [auth Ah]
IPR047873Large ribosomal subunit protein uL16Family
NC [auth b],
WA [auth Aj]
IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
NC [auth b],
WA [auth Aj]
IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
PC [auth d],
YA [auth Al]
IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
PC [auth d],
YA [auth Al]
IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
PC [auth d],
YA [auth Al]
IPR005813Large ribosomal subunit protein bL20Family
EB [auth Ar],
VC [auth j]
IPR001684Large ribosomal subunit protein bL27Family
EB [auth Ar],
VC [auth j]
IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
GB [auth At],
XC [auth l]
IPR050063Universal ribosomal protein uL29Family
GB [auth At],
XC [auth l]
IPR001854Large ribosomal subunit protein uL29Family
GB [auth At],
XC [auth l]
IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
GB [auth At],
XC [auth l]
IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
HB [auth Au],
YC [auth m]
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
HB [auth Au],
YC [auth m]
IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
HB [auth Au],
YC [auth m]
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
HB [auth Au],
YC [auth m]
IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
AD [auth o],
JB [auth Aw]
IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AD [auth o],
JB [auth Aw]
IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
AD [auth o],
JB [auth Aw]
IPR001705Large ribosomal subunit protein bL33Family
AD [auth o],
JB [auth Aw]
IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
DD [auth r],
MB [auth Az]
IPR000473Large ribosomal subunit protein bL36Family
DD [auth r],
MB [auth Az]
IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
KD [auth y],
PB [auth D]
IPR001971Small ribosomal subunit protein uS11Family
KD [auth y],
PB [auth D]
IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
KD [auth y],
PB [auth D]
IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
KD [auth y],
PB [auth D]
IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
LD [auth z],
QB [auth E]
IPR005679Ribosomal protein uS12, bacteriaFamily
LD [auth z],
QB [auth E]
IPR006032Small ribosomal subunit protein uS12Family
LD [auth z],
QB [auth E]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth 8],
V [auth AI]
IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
I [auth 8],
V [auth AI]
IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
I [auth 8],
V [auth AI]
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth 8],
V [auth AI]
IPR000754Small ribosomal subunit protein uS9Family
I [auth 8],
V [auth AI]
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
H [auth 7],
U [auth AH]
IPR000630Small ribosomal subunit protein uS8Family
H [auth 7],
U [auth AH]
IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
H [auth 7],
U [auth AH]
IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
G [auth 6],
T [auth AG]
IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth 6],
T [auth AG]
IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
G [auth 6],
T [auth AG]
IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth 6],
T [auth AG]
IPR000235Small ribosomal subunit protein uS7Family
G [auth 6],
T [auth AG]
IPR023798Small ribosomal subunit protein uS7 domainDomain
JD [auth x]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
JD [auth x]IPR001790Large ribosomal subunit protein uL10Family
JD [auth x]IPR047865Large ribosomal subunit protein uL10, bacteria/organellaFamily
JD [auth x]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
JD [auth x]IPR022973Large ribosomal subunit protein uL10, bacteriaFamily
ZC [auth n]IPR002677Large ribosomal subunit protein bL32Family
ZC [auth n]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
ZC [auth n]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
F [auth 5],
S [auth AF]
IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth 5],
S [auth AF]
IPR000529Small ribosomal subunit protein bS6Family
F [auth 5],
S [auth AF]
IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth 5],
S [auth AF]
IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth 5],
S [auth AF]
IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
NB [auth B]IPR011709DEAD-box helicase, OB foldDomain
NB [auth B]IPR001650Helicase, C-terminal domain-likeDomain
NB [auth B]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
NB [auth B]IPR024590RNA helicase HrpA, C-terminalDomain
NB [auth B]IPR003593AAA+ ATPase domainDomain
NB [auth B]IPR048333Helicase associated domain (HA2), winged-helix domainDomain
NB [auth B]IPR007502Helicase-associated domainDomain
NB [auth B]IPR010222RNA helicase HrpAFamily
NB [auth B]IPR011545DEAD/DEAH-box helicase domainDomain
NB [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
CD [auth q],
LB [auth Ay]
IPR021137Large ribosomal subunit protein bL35-likeFamily
CD [auth q],
LB [auth Ay]
IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
CD [auth q],
LB [auth Ay]
IPR001706Large ribosomal subunit protein bL35Family
CD [auth q],
LB [auth Ay]
IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
BD [auth p],
KB [auth Ax]
IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
BD [auth p],
KB [auth Ax]
IPR000271Large ribosomal subunit protein bL34Family
IB [auth Av]IPR002677Large ribosomal subunit protein bL32Family
IB [auth Av]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IB [auth Av]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
FB [auth As],
WC [auth k]
IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
FB [auth As],
WC [auth k]
IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
FB [auth As],
WC [auth k]
IPR026569Large ribosomal subunit protein bL28Family
FB [auth As],
WC [auth k]
IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
DB [auth Aq],
UC [auth i]
IPR020055Ribosomal protein bL25, short-formFamily
DB [auth Aq],
UC [auth i]
IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
DB [auth Aq],
UC [auth i]
IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
DB [auth Aq],
UC [auth i]
IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
DB [auth Aq],
UC [auth i]
IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
CB [auth Ap],
TC [auth h]
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CB [auth Ap],
TC [auth h]
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CB [auth Ap],
TC [auth h]
IPR003256Large ribosomal subunit protein uL24Family
CB [auth Ap],
TC [auth h]
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
CB [auth Ap],
TC [auth h]
IPR005824KOWDomain
CB [auth Ap],
TC [auth h]
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BB [auth Ao],
SC [auth g]
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
BB [auth Ao],
SC [auth g]
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
BB [auth Ao],
SC [auth g]
IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
BB [auth Ao],
SC [auth g]
IPR013025Large ribosomal subunit protein uL23-likeFamily
AB [auth An],
RC [auth f]
IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
AB [auth An],
RC [auth f]
IPR001063Large ribosomal subunit protein uL22Family
AB [auth An],
RC [auth f]
IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
AB [auth An],
RC [auth f]
IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
AB [auth An],
RC [auth f]
IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
QC [auth e],
ZA [auth Am]
IPR028909Large ribosomal subunit protein bL21-likeFamily
QC [auth e],
ZA [auth Am]
IPR001787Large ribosomal subunit protein bL21Family
QC [auth e],
ZA [auth Am]
IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
QC [auth e],
ZA [auth Am]
IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
OC [auth c],
XA [auth Ak]
IPR001857Large ribosomal subunit protein bL19Family
OC [auth c],
XA [auth Ak]
IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
OC [auth c],
XA [auth Ak]
IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
OC [auth c],
XA [auth Ak]
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth 3],
Q [auth AD]
IPR002942RNA-binding S4 domainDomain
D [auth 3],
Q [auth AD]
IPR022801Small ribosomal subunit protein uS4Family
D [auth 3],
Q [auth AD]
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth 3],
Q [auth AD]
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth 3],
Q [auth AD]
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth 3],
Q [auth AD]
IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
MC [auth a],
VA [auth Ai]
IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
MC [auth a],
VA [auth Ai]
IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
MC [auth a],
VA [auth Ai]
IPR000456Large ribosomal subunit protein bL17Family
IC [auth W],
RA [auth Ae]
IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
IC [auth W],
RA [auth Ae]
IPR005822Large ribosomal subunit protein uL13Family
IC [auth W],
RA [auth Ae]
IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
IC [auth W],
RA [auth Ae]
IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
HC [auth V],
QA [auth Ad]
IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
HC [auth V],
QA [auth Ad]
IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
HC [auth V],
QA [auth Ad]
IPR000911Ribosomal protein uL11Family
HC [auth V],
QA [auth Ad]
IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
HC [auth V],
QA [auth Ad]
IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
HC [auth V],
QA [auth Ad]
IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
HC [auth V],
QA [auth Ad]
IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
GC [auth U],
PA [auth Ac]
IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
GC [auth U],
PA [auth Ac]
IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
GC [auth U],
PA [auth Ac]
IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
GC [auth U],
PA [auth Ac]
IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
GC [auth U],
PA [auth Ac]
IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
GC [auth U],
PA [auth Ac]
IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
GC [auth U],
PA [auth Ac]
IPR000244Large ribosomal subunit protein bL9Family
EC [auth S],
NA [auth Aa]
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
EC [auth S],
NA [auth Aa]
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
EC [auth S],
NA [auth Aa]
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
EC [auth S],
NA [auth Aa]
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
EC [auth S],
NA [auth Aa]
IPR002132Large ribosomal subunit protein uL5Family
EC [auth S],
NA [auth Aa]
IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
C [auth 2],
P [auth AC]
IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
C [auth 2],
P [auth AC]
IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth 2],
P [auth AC]
IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth 2],
P [auth AC]
IPR004087K Homology domainDomain
C [auth 2],
P [auth AC]
IPR004044K Homology domain, type 2Domain
C [auth 2],
P [auth AC]
IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth 2],
P [auth AC]
IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth 2],
P [auth AC]
IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
CC [auth Q],
LA [auth AY]
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
CC [auth Q],
LA [auth AY]
IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
CC [auth Q],
LA [auth AY]
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
CC [auth Q],
LA [auth AY]
IPR000597Large ribosomal subunit protein uL3Family
FA [auth AS],
GD [auth u]
IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
FA [auth AS],
GD [auth u]
IPR002583Small ribosomal subunit protein bS20Family
EA [auth AR],
FD [auth t]
IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
EA [auth AR],
FD [auth t]
IPR002222Small ribosomal subunit protein uS19Family
EA [auth AR],
FD [auth t]
IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
EA [auth AR],
FD [auth t]
IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
B [auth 1],
O [auth AB]
IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth 1],
O [auth AB]
IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth 1],
O [auth AB]
IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth 1],
O [auth AB]
IPR001865Small ribosomal subunit protein uS2Family
CA [auth AP],
VB [auth J]
IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
CA [auth AP],
VB [auth J]
IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
CA [auth AP],
VB [auth J]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth AP],
VB [auth J]
IPR000266Small ribosomal subunit protein uS17Family
BA [auth AO],
UB [auth I]
IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
BA [auth AO],
UB [auth I]
IPR000307Small ribosomal subunit protein bS16Family
BA [auth AO],
UB [auth I]
IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
AA [auth AN],
TB [auth H]
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
AA [auth AN],
TB [auth H]
IPR000589Small ribosomal subunit protein uS15Family
AA [auth AN],
TB [auth H]
IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
SB [auth G],
Z [auth AM]
IPR001209Small ribosomal subunit protein uS14Family
SB [auth G],
Z [auth AM]
IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
SB [auth G],
Z [auth AM]
IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
HD [auth v],
L [auth A1]
IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
HD [auth v],
L [auth A1]
IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
HD [auth v],
L [auth A1]
IPR001911Small ribosomal subunit protein bS21Family
J [auth 9],
W [auth AJ]
IPR027486Small ribosomal subunit protein uS10 domainDomain
J [auth 9],
W [auth AJ]
IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
J [auth 9],
W [auth AJ]
IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
J [auth 9],
W [auth AJ]
IPR001848Small ribosomal subunit protein uS10Family