9GB5 | pdb_00009gb5

Contracted phiCD508 neck

External Resource: Annotation

Protein Family Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth a], BA [auth b], CA [auth c], I, J, AA [auth a], BA [auth b], CA [auth c], I, J, S, T, U, V, W, Y, Z	PF17481	Phage tail sheath protein beta-sandwich domain (Phage_sheath_domII)	Phage tail sheath protein beta-sandwich domain	This entry represents a two-layer beta sandwich domain found in a variety of phage tail sheath proteins, referred to as domain II in [4,5]. Domain I and II form the protease-resistant fragment [5].	Domain
AA [auth a], BA [auth b], CA [auth c], I, J, AA [auth a], BA [auth b], CA [auth c], I, J, S, T, U, V, W, Y, Z	PF05133	Phage portal protein, SPP1 Gp6-like (SPP1_portal)	Phage portal protein, SPP1 Gp6-like	-	Family
DA [auth d], H, L, N, P, DA [auth d], H, L, N, P, R	PF17481	Phage tail sheath protein beta-sandwich domain (Phage_sheath_domII)	Phage tail sheath protein beta-sandwich domain	This entry represents a two-layer beta sandwich domain found in a variety of phage tail sheath proteins, referred to as domain II in [4,5]. Domain I and II form the protease-resistant fragment [5].	Domain
DA [auth d], H, L, N, P, DA [auth d], H, L, N, P, R	PF05133	Phage portal protein, SPP1 Gp6-like (SPP1_portal)	Phage portal protein, SPP1 Gp6-like	-	Family
DA [auth d], H, L, N, P, DA [auth d], H, L, N, P, R	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain
G, K, M, O, Q G, K, M, O, Q, X	PF17481	Phage tail sheath protein beta-sandwich domain (Phage_sheath_domII)	Phage tail sheath protein beta-sandwich domain	This entry represents a two-layer beta sandwich domain found in a variety of phage tail sheath proteins, referred to as domain II in [4,5]. Domain I and II form the protease-resistant fragment [5].	Domain
G, K, M, O, Q G, K, M, O, Q, X	PF05133	Phage portal protein, SPP1 Gp6-like (SPP1_portal)	Phage portal protein, SPP1 Gp6-like	-	Family
A, B, C, D, E A, B, C, D, E, F	PF17481	Phage tail sheath protein beta-sandwich domain (Phage_sheath_domII)	Phage tail sheath protein beta-sandwich domain	This entry represents a two-layer beta sandwich domain found in a variety of phage tail sheath proteins, referred to as domain II in [4,5]. Domain I and II form the protease-resistant fragment [5].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s], TA [auth t], UA [auth u], VA [auth v]	IPR021145	Portal protein SPP1 Gp6-like	Family
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j]	IPR020287	Tail sheath protein, C-terminal domain	Domain
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j]	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j]	IPR035326	Phage tail sheath protein-like, beta-sandwich domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR018989	Phage tail tube protein	Family
A, B, C, D, E A, B, C, D, E, F	IPR038628	XkdM-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.