9GB2 | pdb_00009gb2

Extended phiCD508 baseplate

External Resource: Annotation

Protein Family Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
S, T, U, V, W S, T, U, V, W, X	PF01476	LysM domain (LysM)	LysM domain	The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation [1]. This domain may have a general peptidoglycan binding function. The structure of this domain is known [2].	Domain
M, N, O, P, Q M, N, O, P, Q, R	PF10076	Bacteriophage Mu-like, Gp48 (Phage_Mu_Gp48)	Bacteriophage Mu-like, Gp48	-	Family
M, N, O, P, Q M, N, O, P, Q, R	PF10934	Contractile injection system sheath initiator (Sheath_initiator)	Contractile injection system sheath initiator	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF17481	Phage tail sheath protein beta-sandwich domain (Phage_sheath_domII)	Phage tail sheath protein beta-sandwich domain	This entry represents a two-layer beta sandwich domain found in a variety of phage tail sheath proteins, referred to as domain II in [4,5]. Domain I and II form the protease-resistant fragment [5].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF10934	Contractile injection system sheath initiator (Sheath_initiator)	Contractile injection system sheath initiator	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF04865	Baseplate J-like protein barrel domain (Baseplate_J)	Baseplate J-like protein barrel domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in va ...	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in various baseplate J-like proteins.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p]	IPR020288	Contractile injection system sheath initiator	Family
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j]	IPR020287	Tail sheath protein, C-terminal domain	Domain
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j]	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j]	IPR035326	Phage tail sheath protein-like, beta-sandwich domain	Domain
AA [auth a], BA [auth b], CA [auth c], DA [auth d], Y, AA [auth a], BA [auth b], CA [auth c], DA [auth d], Y, Z	IPR018989	Phage tail tube protein	Family
AA [auth a], BA [auth b], CA [auth c], DA [auth d], Y, AA [auth a], BA [auth b], CA [auth c], DA [auth d], Y, Z	IPR038628	XkdM-like superfamily	Homologous Superfamily
S, T, U, V, W S, T, U, V, W, X	IPR036779	LysM domain superfamily	Homologous Superfamily
S, T, U, V, W S, T, U, V, W, X	IPR052196	Bacterial Potassium Binding	Family
S, T, U, V, W S, T, U, V, W, X	IPR018392	LysM domain	Domain
M, N, O, P, Q M, N, O, P, Q, R	IPR018755	Bacteriophage Mu-like, Gp48	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR052399	Phage Baseplate Assembly Protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR006949	Baseplate protein J-like, barrel domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.