9G7F | pdb_00009g7f

Cryo-EM structure of Acetyl-coenzyme A synthetase (AcsA) dimer

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Rad60-SLD	e9g7fC01	A: a/b three-layered sandwiches	X: ATP-grasp_6	H: ATP-grasp_6	T: ATP-grasp_6	F: Rad60-SLD	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A]	PF00501	AMP-binding enzyme (AMP-binding)	AMP-binding enzyme	-	Family
A [auth B], B [auth A]	PF13193	AMP-binding enzyme C-terminal domain (AMP-binding_C)	AMP-binding enzyme C-terminal domain	This is a small domain that is found C terminal to Pfam:PF00501. It has a central beta sheet core that is flanked by alpha helices.	Domain
C	PF00583	Acetyltransferase (GNAT) family (Acetyltransf_1)	Acetyltransferase (GNAT) family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A]	Acetyl-coenzyme A synthetase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding CoA-ligase activity ligase activity, forming carbon-sulfur bonds acetate-CoA ligase activity catalytic activity acid-thiol ligase activity ligase activity cation binding metal ion binding	nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process nucleobase-containing compound biosynthetic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acetyl-CoA biosynthetic process sulfur compound biosynthetic process acyl-CoA metabolic process biosynthetic process organophosphate metabolic process nucleobase-containing small molecule metabolic process organophosphate biosynthetic process purine-containing compound biosynthetic process acyl-CoA biosynthetic process nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process nucleobase-containing compound biosynthetic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acetyl-CoA biosynthetic process sulfur compound biosynthetic process acyl-CoA metabolic process biosynthetic process organophosphate metabolic process nucleobase-containing small molecule metabolic process organophosphate biosynthetic process purine-containing compound biosynthetic process acyl-CoA biosynthetic process phosphate-containing compound metabolic process nucleoside phosphate biosynthetic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane microdomain membrane raft
C	Acetoin utilization protein AcuA	oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors acetoin dehydrogenase (NAD+) activity catalytic activity acetyltransferase activity acetyl-CoA synthetase acetyltransferase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity	cellular response to stimulus cellular response to chemical stimulus response to stimulus response to chemical cellular response to acetate response to oxygen-containing compound cellular process response to acetate cellular response to oxygen-containing compound developmental process cellular developmental process spore germination diol catabolic process polyol metabolic process cellular response to stimulus cellular response to chemical stimulus response to stimulus response to chemical cellular response to acetate response to oxygen-containing compound cellular process response to acetate cellular response to oxygen-containing compound developmental process cellular developmental process spore germination diol catabolic process polyol metabolic process alcohol catabolic process catabolic process polyol catabolic process alcohol metabolic process glycol metabolic process butanediol metabolic process secondary alcohol metabolic process diol metabolic process glycol catabolic process small molecule metabolic process metabolic process small molecule catabolic process butanediol catabolic process regulation of cellular process negative regulation of biological process carbon catabolite regulation of transcription regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process primary metabolic process catabolite repression carbon catabolite repression regulation of gene expression cellular response to nutrient levels biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process response to nutrient levels negative regulation of transcription by glucose RNA metabolic process RNA biosynthetic process carbon catabolite repression of transcription nucleic acid biosynthetic process carbon catabolite repression of transcription by glucose negative regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process biological regulation response to nutrient regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process negative regulation of biosynthetic process cellular response to nutrient regulation of transcription by glucose acetoin catabolic process ketone metabolic process acetoin metabolic process ketone catabolic process sporulation resulting in formation of a cellular spore anatomical structure morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development sporulation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A]	IPR020845	AMP-binding, conserved site	Conserved Site
A [auth B], B [auth A]	IPR042099	ANL, N-terminal domain	Homologous Superfamily
A [auth B], B [auth A]	IPR045851	AMP-binding enzyme domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR025110	AMP-binding enzyme, C-terminal domain	Domain
A [auth B], B [auth A]	IPR000873	AMP-dependent synthetase/ligase domain	Domain
C	IPR024699	Acetoin utilization protein AcuA	Family
C	IPR016181	Acyl-CoA N-acyltransferase	Homologous Superfamily
C	IPR000182	GNAT domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.