9EYT | pdb_00009eyt

Crystal structure of Yeast Clathrin Heavy Chain N-terminal domain bound to Epsin-1 peptide (LIDL)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF09268	Clathrin, heavy-chain linker (Clathrin-link)	Clathrin, heavy-chain linker	-	Repeat
A	PF01394	Clathrin propeller repeat (Clathrin_propel)	Clathrin propeller repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Clathrin heavy chain	clathrin binding protein binding binding clathrin light chain binding structural molecule activity	cellular localization establishment of protein localization nitrogen compound transport transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport cellular component organization cellular localization establishment of protein localization nitrogen compound transport transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport cellular component organization organelle organization actin cytoskeleton organization cortical actin cytoskeleton organization cortical cytoskeleton organization actin filament-based process cellular component organization or biogenesis cytoskeleton organization clathrin coat assembly cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly import into cell endocytosis vesicle-mediated transport Golgi to endosome transport post-Golgi vesicle-mediated transport cytosolic transport Golgi vesicle transport receptor-mediated endocytosis	protein-containing complex intracellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex coated membrane endomembrane system clathrin coat membrane coat cell periphery cellular anatomical structure clathrin-coated pit cytoplasm protein-containing complex intracellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex coated membrane endomembrane system clathrin coat membrane coat cell periphery cellular anatomical structure clathrin-coated pit cytoplasm clathrin coat of coated pit cell cortex cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton intracellular organelle endocytic patch cytoskeleton organelle membraneless organelle cortical actin cytoskeleton actin cortical patch clathrin complex cytosol membrane-bounded organelle vesicle coat intracellular vesicle transport vesicle membrane clathrin coat of trans-Golgi network vesicle bounding membrane of organelle trans-Golgi network transport vesicle membrane trans-Golgi network transport vesicle vesicle membrane cytoplasmic vesicle clathrin-coated vesicle clathrin vesicle coat coated vesicle Golgi-associated vesicle vesicle clathrin-coated vesicle membrane transport vesicle Golgi apparatus intracellular membrane-bounded organelle coated vesicle membrane cytoplasmic vesicle membrane Golgi-associated vesicle membrane organelle membrane
B [auth E], C [auth G], D [auth M]	Epsin-1	clathrin binding protein binding binding ubiquitin binding ubiquitin-like protein binding polyubiquitin modification-dependent protein binding modification-dependent protein binding K63-linked polyubiquitin modification-dependent protein binding phospholipid binding lipid binding	actin cortical patch organization actin cytoskeleton organization cortical cytoskeleton organization actin cortical patch assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly cortical actin cytoskeleton organization actin filament-based process cellular process cellular component organization or biogenesis cytoskeleton organization localization actin cortical patch organization actin cytoskeleton organization cortical cytoskeleton organization actin cortical patch assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly cortical actin cytoskeleton organization actin filament-based process cellular process cellular component organization or biogenesis cytoskeleton organization localization import into cell transport endocytosis establishment of localization vesicle-mediated transport actin filament organization supramolecular fiber organization	membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle cellular bud membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle cellular bud cellular bud tip site of polarized growth cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection cell periphery plasma membrane membrane cellular bud neck protein-containing complex vesicle coat membrane protein complex membrane coat bounding membrane of organelle vesicle membrane clathrin-coated vesicle clathrin vesicle coat coated vesicle clathrin-coated vesicle membrane coated membrane clathrin coat coated vesicle membrane cytoplasmic vesicle membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	Repeat
A	IPR016341	Clathrin, heavy chain	Family
A	IPR015348	Clathrin, heavy chain, linker, core motif	Domain
A	IPR016024	Armadillo-type fold	Homologous Superfamily
A	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A	IPR022365	Clathrin, heavy chain, propeller repeat	Repeat
A	IPR055358	Clathrin heavy-chain repeat	Repeat
A	IPR016025	Clathrin heavy chain, N-terminal	Homologous Superfamily
B [auth E], C [auth G], D [auth M]	IPR008942	ENTH/VHS	Homologous Superfamily
B [auth E], C [auth G], D [auth M]	IPR013809	ENTH domain	Domain
B [auth E], C [auth G], D [auth M]	IPR003903	Ubiquitin interacting motif	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.