Annotations: 9EXT

Crystal structure of Yeast Clathrin Heavy Chain N-terminal domain bound to APL2/AP-1 Beta peptide (LLDL)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	WD40	e9extB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A	WD40	e9extA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF09268	Clathrin, heavy-chain linker (Clathrin-link)	Clathrin, heavy-chain linker	-	Repeat
A, B	PF01394	Clathrin propeller repeat (Clathrin_propel)	Clathrin propeller repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H]	AP-1 complex subunit beta-1	clathrin binding protein binding binding	cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport post-Golgi vesicle-mediated transport vesicle-mediated transport cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport post-Golgi vesicle-mediated transport vesicle-mediated transport Golgi to vacuole transport intercellular transport vacuolar transport Golgi vesicle transport	cellular anatomical structure clathrin-coated pit membrane endomembrane system intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex vesicle coat intracellular vesicle membrane protein complex transport vesicle membrane clathrin coat of trans-Golgi network vesicle cellular anatomical structure clathrin-coated pit membrane endomembrane system intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex vesicle coat intracellular vesicle membrane protein complex transport vesicle membrane clathrin coat of trans-Golgi network vesicle intracellular organelle membrane coat bounding membrane of organelle trans-Golgi network transport vesicle membrane trans-Golgi network transport vesicle AP-type membrane coat adaptor complex AP-1 adaptor complex vesicle membrane cytoplasmic vesicle clathrin-coated vesicle clathrin vesicle coat coated vesicle Golgi-associated vesicle vesicle clathrin-coated vesicle membrane transport vesicle Golgi apparatus intracellular membrane-bounded organelle coated membrane clathrin coat coated vesicle membrane cytoplasmic vesicle membrane organelle Golgi-associated vesicle membrane organelle membrane clathrin adaptor complex cell periphery plasma membrane
A, B	Clathrin heavy chain	clathrin binding protein binding binding clathrin light chain binding structural molecule activity	cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport cellular component organization organelle organization cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport cellular component organization organelle organization actin cytoskeleton organization cortical actin cytoskeleton organization cortical cytoskeleton organization actin filament-based process cellular component organization or biogenesis cytoskeleton organization clathrin coat assembly cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly import into cell endocytosis vesicle-mediated transport Golgi to endosome transport post-Golgi vesicle-mediated transport intercellular transport cytosolic transport Golgi vesicle transport receptor-mediated endocytosis	protein-containing complex intracellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex coated membrane endomembrane system clathrin coat membrane coat cell periphery cellular anatomical structure clathrin-coated pit cytoplasm protein-containing complex intracellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex coated membrane endomembrane system clathrin coat membrane coat cell periphery cellular anatomical structure clathrin-coated pit cytoplasm clathrin coat of coated pit cell cortex cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton intracellular organelle endocytic patch cytoskeleton organelle membraneless organelle cortical actin cytoskeleton actin cortical patch clathrin complex cytosol membrane-bounded organelle vesicle coat intracellular vesicle transport vesicle membrane clathrin coat of trans-Golgi network vesicle bounding membrane of organelle trans-Golgi network transport vesicle membrane trans-Golgi network transport vesicle vesicle membrane cytoplasmic vesicle clathrin-coated vesicle clathrin vesicle coat coated vesicle Golgi-associated vesicle vesicle clathrin-coated vesicle membrane transport vesicle Golgi apparatus intracellular membrane-bounded organelle coated vesicle membrane cytoplasmic vesicle membrane Golgi-associated vesicle membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H]	IPR016024	Armadillo-type fold	Homologous Superfamily
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H]	IPR002553	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Domain
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H]	IPR026739	AP complex subunit beta	Family
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H]	IPR011989	Armadillo-like helical	Homologous Superfamily
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H]	IPR016342	AP-1/2/4 complex subunit beta	Family
A, B	IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	Repeat
A, B	IPR016341	Clathrin, heavy chain	Family
A, B	IPR015348	Clathrin, heavy chain, linker, core motif	Domain
A, B	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B	IPR022365	Clathrin, heavy chain, propeller repeat	Repeat
A, B	IPR055358	Clathrin heavy-chain repeat	Repeat
A, B	IPR016025	Clathrin heavy chain, N-terminal	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9EXT | pdb_00009ext

Crystal structure of Yeast Clathrin Heavy Chain N-terminal domain bound to APL2/AP-1 Beta peptide (LLDL)

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage