9EPC | pdb_00009epc

Cryo-EM structure of the Plastid-encoded RNA polymerase from Sinapis alba

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	PPR, PPR_2, PPR_3, PPR_long, TPR_24	e9epcG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PPR, PPR_2, PPR_3, PPR_long, TPR_24	ECOD (v295.2)
D	WD40	e9epcD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
C	Glyco_hydro_10	e9epcC2	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Glyco_hydro_10	ECOD (v295.2)
T	WD40	e9epcT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
S	WD40	e9epcS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
Q	WD40	e9epcQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
N	WD40	e9epcN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
L	WD40	e9epcL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
K	WD40	e9epcK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
B	WD40	e9epcB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
A	WD40	e9epcA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J	PAP5, pTAC12, HEMERA	-	-	-
I	PAP4, FSD3	-	-	-
H	PAP3, pTAC10	-	-	-
G	PAP2, pTAC2	-	-	-
F	PAP1, pTAC3	-	-	-
E	DNA-directed RNA polymerase subunit beta''	DNA binding binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity DNA binding binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
D	DNA-directed RNA polymerase subunit beta'	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding DNA binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding DNA binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups transition metal ion binding zinc ion binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
C	RpoB, subunit beta	-	-	-
U	PRIN2, PLASTID REDOX INSENSITIVE 2	-	-	-
T	pTAC18	-	-	-
S	FLN2	-	-	-
R	PAP12, pTAC7	-	-	-
Q	PAP11, MurE-like	-	-	-
O, P	PAP10, TRXz	-	-	-
N	PAP9, FSD2	-	-	-
M	PAP8, pTAC6	-	-	-
L	PAP7, pTAC14	-	-	-
K	PAP6, FLN1	-	-	-
A, B	DNA-directed RNA polymerase subunit alpha	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E	IPR007081	RNA polymerase Rpb1, domain 5	Domain
E	IPR007083	RNA polymerase Rpb1, domain 4	Domain
E	IPR038120	RNA polymerase Rpb1, funnel domain superfamily	Homologous Superfamily
E	IPR050254	DNA-directed RNA polymerase, subunit beta'', eukaryote	Family
E	IPR012756	DNA-directed RNA polymerase, subunit beta''	Family
E	IPR042102	RNA polymerase Rpb1, domain 3 superfamily	Homologous Superfamily
D	IPR045867	DNA-directed RNA polymerase, subunit beta-prime	Family
D	IPR034678	DNA-directed RNA polymerase subunit RpoC1	Family
D	IPR042102	RNA polymerase Rpb1, domain 3 superfamily	Homologous Superfamily
D	IPR000722	RNA polymerase, alpha subunit	Domain
D	IPR044893	RNA polymerase Rpb1, clamp domain superfamily	Homologous Superfamily
D	IPR006592	RNA polymerase, N-terminal	Domain
D	IPR007080	RNA polymerase Rpb1, domain 1	Domain