9EOK | pdb_00009eok

Minus end of the vertebrate gamma-tubulin ring complex-capped microtubule

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	WD40	e9eokZ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
Y	WD40	e9eokY1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
X	WD40	e9eokX1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
W	WD40	e9eokW1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
V	WD40	e9eokV1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
U	WD40	e9eokU1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
T	WD40	e9eokT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
S	WD40	e9eokS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
R	WD40	e9eokR1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
Q	WD40	e9eokQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
PA [auth s]	WD40	e9eoks1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
OA [auth r]	WD40	e9eokr1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
NA [auth q]	WD40	e9eokq1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
MA [auth p]	WD40	e9eokp1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
LA [auth o]	WD40	e9eoko1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
F	WD40	e9eokF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
BA [auth b]	WD40	e9eokb1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
B	RRM_1	e9eokB01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RRM_1	ECOD (v295.2)
AA [auth a]	WD40	e9eoka1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
P	WD40	e9eokP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
O	WD40	e9eokO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
N	WD40	e9eokN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
M	WD40	e9eokM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
L	WD40	e9eokL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
KA [auth k]	WD40	e9eokk1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
K	WD40	e9eokK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
JA [auth j]	WD40	e9eokj1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
J	WD40	e9eokJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
IA [auth i]	WD40	e9eoki1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
I	WD40	e9eokI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
HA [auth h]	WD40	e9eokh1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
H	WD40	e9eokH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
GA [auth g]	WD40	e9eokg1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
G	WD40	e9eokG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
FA [auth f]	WD40	e9eokf1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
EA [auth e]	WD40	e9eoke1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
E	WD40	e9eokE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
DA [auth d]	WD40	e9eokd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
D	WD40	e9eokD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
CA [auth c]	WD40	e9eokc1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
C	WD40	e9eokC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: WD40	ECOD (v295.2)
A	RRM_1	e9eokA01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RRM_1	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth a], B, BA [auth b], F, LA [auth o], AA [auth a], B, BA [auth b], F, LA [auth o], MA [auth p], NA [auth q], OA [auth r], PA [auth s], Q, R, S, T, U, V, W, X, Y, Z	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
AA [auth a], B, BA [auth b], F, LA [auth o], AA [auth a], B, BA [auth b], F, LA [auth o], MA [auth p], NA [auth q], OA [auth r], PA [auth s], Q, R, S, T, U, V, W, X, Y, Z	PF03953	Tubulin C-terminal domain (Tubulin_C)	Tubulin C-terminal domain	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).	Domain
A, C, CA [auth c], D, DA [auth d], A, C, CA [auth c], D, DA [auth d], E, EA [auth e], FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, M, N, O, P	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
A, C, CA [auth c], D, DA [auth d], A, C, CA [auth c], D, DA [auth d], E, EA [auth e], FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, M, N, O, P	PF03953	Tubulin C-terminal domain (Tubulin_C)	Tubulin C-terminal domain	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth a], B, BA [auth b], F, LA [auth o], AA [auth a], B, BA [auth b], F, LA [auth o], MA [auth p], NA [auth q], OA [auth r], PA [auth s], Q, R, S, T, U, V, W, X, Y, Z	Tubulin beta-4 chain	structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	cellular process cell cycle mitotic cell cycle microtubule-based process	polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton
A, C, CA [auth c], D, DA [auth d], A, C, CA [auth c], D, DA [auth d], E, EA [auth e], FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, M, N, O, P	Tubulin alpha chain	structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	microtubule-based process cellular process	polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth a], B, BA [auth b], F, LA [auth o], AA [auth a], B, BA [auth b], F, LA [auth o], MA [auth p], NA [auth q], OA [auth r], PA [auth s], Q, R, S, T, U, V, W, X, Y, Z	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
AA [auth a], B, BA [auth b], F, LA [auth o], AA [auth a], B, BA [auth b], F, LA [auth o], MA [auth p], NA [auth q], OA [auth r], PA [auth s], Q, R, S, T, U, V, W, X, Y, Z	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
AA [auth a], B, BA [auth b], F, LA [auth o], AA [auth a], B, BA [auth b], F, LA [auth o], MA [auth p], NA [auth q], OA [auth r], PA [auth s], Q, R, S, T, U, V, W, X, Y, Z	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
AA [auth a], B, BA [auth b], F, LA [auth o], AA [auth a], B, BA [auth b], F, LA [auth o], MA [auth p], NA [auth q], OA [auth r], PA [auth s], Q, R, S, T, U, V, W, X, Y, Z	IPR017975	Tubulin, conserved site	Conserved Site
AA [auth a], B, BA [auth b], F, LA [auth o], AA [auth a], B, BA [auth b], F, LA [auth o], MA [auth p], NA [auth q], OA [auth r], PA [auth s], Q, R, S, T, U, V, W, X, Y, Z	IPR000217	Tubulin	Family
AA [auth a], B, BA [auth b], F, LA [auth o], AA [auth a], B, BA [auth b], F, LA [auth o], MA [auth p], NA [auth q], OA [auth r], PA [auth s], Q, R, S, T, U, V, W, X, Y, Z	IPR023123	Tubulin, C-terminal	Homologous Superfamily
AA [auth a], B, BA [auth b], F, LA [auth o], AA [auth a], B, BA [auth b], F, LA [auth o], MA [auth p], NA [auth q], OA [auth r], PA [auth s], Q, R, S, T, U, V, W, X, Y, Z	IPR002453	Beta tubulin	Family
AA [auth a], B, BA [auth b], F, LA [auth o], AA [auth a], B, BA [auth b], F, LA [auth o], MA [auth p], NA [auth q], OA [auth r], PA [auth s], Q, R, S, T, U, V, W, X, Y, Z	IPR013838	Beta tubulin, autoregulation binding site	Binding Site
AA [auth a], B, BA [auth b], F, LA [auth o], AA [auth a], B, BA [auth b], F, LA [auth o], MA [auth p], NA [auth q], OA [auth r], PA [auth s], Q, R, S, T, U, V, W, X, Y, Z	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
AA [auth a], B, BA [auth b], F, LA [auth o], AA [auth a], B, BA [auth b], F, LA [auth o], MA [auth p], NA [auth q], OA [auth r], PA [auth s], Q, R, S, T, U, V, W, X, Y, Z	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily
A, C, CA [auth c], D, DA [auth d], A, C, CA [auth c], D, DA [auth d], E, EA [auth e], FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, M, N, O, P	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
A, C, CA [auth c], D, DA [auth d], A, C, CA [auth c], D, DA [auth d], E, EA [auth e], FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, M, N, O, P	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
A, C, CA [auth c], D, DA [auth d], A, C, CA [auth c], D, DA [auth d], E, EA [auth e], FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, M, N, O, P	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
A, C, CA [auth c], D, DA [auth d], A, C, CA [auth c], D, DA [auth d], E, EA [auth e], FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, M, N, O, P	IPR017975	Tubulin, conserved site	Conserved Site
A, C, CA [auth c], D, DA [auth d], A, C, CA [auth c], D, DA [auth d], E, EA [auth e], FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, M, N, O, P	IPR002452	Alpha tubulin	Family
A, C, CA [auth c], D, DA [auth d], A, C, CA [auth c], D, DA [auth d], E, EA [auth e], FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, M, N, O, P	IPR000217	Tubulin	Family
A, C, CA [auth c], D, DA [auth d], A, C, CA [auth c], D, DA [auth d], E, EA [auth e], FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, M, N, O, P	IPR023123	Tubulin, C-terminal	Homologous Superfamily
A, C, CA [auth c], D, DA [auth d], A, C, CA [auth c], D, DA [auth d], E, EA [auth e], FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, M, N, O, P	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
A, C, CA [auth c], D, DA [auth d], A, C, CA [auth c], D, DA [auth d], E, EA [auth e], FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, M, N, O, P	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily