9EH5 | pdb_00009eh5

Structure of a mutated photosystem II complex reveals changes to the hydrogen-bonding network that affect proton egress during O-O bond formation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I [auth J]	SCOP2B Superfamily	Photosystem II reaction center protein J, PsbJ	8106244	3001534	SCOP2B (2022-06-29)
DA [auth j]	SCOP2B Superfamily	Photosystem II reaction center protein J, PsbJ	8106244	3001534	SCOP2B (2022-06-29)
H [auth I]	SCOP2B Superfamily	Photosystem II reaction center protein I, PsbI	8099534	3001590	SCOP2B (2022-06-29)
CA [auth i]	SCOP2B Superfamily	Photosystem II reaction center protein I, PsbI	8099534	3001590	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	Photosystem II 10 kDa phosphoprotein PsbH	8098516	3001547	SCOP2B (2022-06-29)
BA [auth h]	SCOP2B Superfamily	Photosystem II 10 kDa phosphoprotein PsbH	8098516	3001547	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cytochrome b559 subunits	8098318	3001602	SCOP2B (2022-06-29)
AA [auth f]	SCOP2B Superfamily	Cytochrome b559 subunits	8098318	3001602	SCOP2B (2022-06-29)
Z [auth e]	SCOP2B Superfamily	Cytochrome b559 subunits	8098316	3001602	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cytochrome b559 subunits	8098316	3001602	SCOP2B (2022-06-29)
Y [auth d]	SCOP2B Superfamily	Bacterial photosystem II reaction centre, L and M subunits	8098320	3000736	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Bacterial photosystem II reaction centre, L and M subunits	8098320	3000736	SCOP2B (2022-06-29)
X [auth c]	SCOP2B Superfamily	Photosystem II antenna protein-like	8098322	3001674	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Photosystem II antenna protein-like	8098322	3001674	SCOP2B (2022-06-29)
U [auth Z]	SCOP2B Superfamily	PsbZ-like	8106246	3001624	SCOP2B (2022-06-29)
PA [auth z]	SCOP2B Superfamily	PsbZ-like	8106246	3001624	SCOP2B (2022-06-29)
W [auth b]	SCOP2B Superfamily	Photosystem II antenna protein-like	8098282	3001674	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Photosystem II antenna protein-like	8098282	3001674	SCOP2B (2022-06-29)
R [auth V]	SCOP2B Superfamily	Cytochrome c	8032498	3000815	SCOP2B (2022-06-29)
MA [auth v]	SCOP2B Superfamily	Cytochrome c	8032498	3000815	SCOP2B (2022-06-29)
Q [auth U]	SCOP2B Superfamily	PsbU/PolX domain-like	8106294	3000893	SCOP2B (2022-06-29)
LA [auth u]	SCOP2B Superfamily	PsbU/PolX domain-like	8106294	3000893	SCOP2B (2022-06-29)
M [auth O]	SCOP2B Superfamily	OMPA barrel-like	8106230	3000208	SCOP2B (2022-06-29)
HA [auth o]	SCOP2B Superfamily	OMPA barrel-like	8106230	3000208	SCOP2B (2022-06-29)
L [auth M]	SCOP2B Superfamily	Photosystem II reaction center protein M, PsbM	8101579	3001573	SCOP2B (2022-06-29)
GA [auth m]	SCOP2B Superfamily	Photosystem II reaction center protein M, PsbM	8101579	3001573	SCOP2B (2022-06-29)
K [auth L]	SCOP2B Superfamily	Photosystem II reaction center protein L, PsbL	8099538	3001523	SCOP2B (2022-06-29)
FA [auth l]	SCOP2B Superfamily	Photosystem II reaction center protein L, PsbL	8099538	3001523	SCOP2B (2022-06-29)
J [auth K]	SCOP2B Superfamily	Photosystem II reaction center protein K, PsbK	8098520	3001585	SCOP2B (2022-06-29)
EA [auth k]	SCOP2B Superfamily	Photosystem II reaction center protein K, PsbK	8098520	3001585	SCOP2B (2022-06-29)
V [auth a]	SCOP2B Superfamily	Bacterial photosystem II reaction centre, L and M subunits	8098522	3000736	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Bacterial photosystem II reaction centre, L and M subunits	8098522	3000736	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
DA [auth j], I [auth J]	PF01788	PsbJ (PsbJ)	PsbJ	-	Family
CA [auth i], H [auth I]	PF02532	Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)	Photosystem II reaction centre I protein (PSII 4.8 kDa protein)	-	Family
BA [auth h], G [auth H]	PF00737	Photosystem II 10 kDa phosphoprotein (PsbH)	Photosystem II 10 kDa phosphoprotein	-	Family
E, Z [auth e]	PF00283	Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)	Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits	-	Family
E, Z [auth e]	PF00284	Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)	Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit	-	Family
D, Y [auth d]	PF00124	Photosynthetic reaction centre protein (Photo_RC)	Photosynthetic reaction centre protein	-	Family
C, X [auth c]	PF00421	Photosystem II protein (PSII)	Photosystem II protein	-	Family
PA [auth z], U [auth Z]	PF01737	YCF9 (Ycf9)	YCF9	-	Family
NA [auth x], S [auth X]	PF06596	Photosystem II reaction centre X protein (PsbX) (PsbX)	Photosystem II reaction centre X protein (PsbX)	-	Family
MA [auth v], R [auth V]	PF14495	Cytochrome c-550 domain (Cytochrom_C550)	Cytochrome c-550 domain	This domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1].	Domain
LA [auth u], Q [auth U]	PF06514	Photosystem II 12 kDa extrinsic protein (PsbU) (PsbU)	Photosystem II 12 kDa extrinsic protein (PsbU)	-	Family
KA [auth t], P [auth T]	PF01405	Photosystem II reaction centre T protein (PsbT)	Photosystem II reaction centre T protein	The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity ...	The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity under adverse growth conditions [1].	Domain
HA [auth o], M [auth O]	PF01716	Manganese-stabilising protein / photosystem II polypeptide (MSP)	Manganese-stabilising protein / photosystem II polypeptide	-	Family
GA [auth m], L [auth M]	PF05151	Photosystem II reaction centre M protein (PsbM) (PsbM)	Photosystem II reaction centre M protein (PsbM)	-	Family
FA [auth l], K [auth L]	PF02419	PsbL protein (PsbL)	PsbL protein	-	Family
A, V [auth a]	PF00124	Photosynthetic reaction centre protein (Photo_RC)	Photosynthetic reaction centre protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
DA [auth j], I [auth J]	Photosystem II reaction center protein J	-	photosynthesis metabolic process cellular process	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane protein complex protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane protein complex plasma membrane cell periphery plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosystem II reaction center plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
CA [auth i], H [auth I]	Photosystem II reaction center protein I	-	photosynthesis metabolic process cellular process	protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosynthetic membrane thylakoid photosystem II reaction center plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
BA [auth h], G [auth H]	Photosystem II reaction center protein H	ion binding binding anion binding phosphate ion binding small molecule binding	regulation of protein stability biological regulation regulation of biological quality protein stabilization photosynthesis metabolic process cellular process	protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
AA [auth f], F	Cytochrome b559 subunit beta	binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding identical protein binding protein binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosynthetic membrane thylakoid photosystem II reaction center plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
E, Z [auth e]	Cytochrome b559 subunit alpha	binding tetrapyrrole binding heme binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding electron transfer activity	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle photosystem II reaction center intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle photosystem II reaction center intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane plasma membrane plasma membrane-derived chromatophore thylakoid membrane cell periphery plasma membrane-derived thylakoid membrane plasma membrane region bacterial thylakoid cytoplasm plasma membrane protein complex plasma membrane-derived thylakoid photosystem II
D, Y [auth d]	Photosystem II D2 protein	oxidoreductase activity oxygen evolving activity catalytic activity chlorophyll binding binding tetrapyrrole binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding electron transfer activity	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane plasma membrane plasma membrane-derived chromatophore thylakoid membrane cell periphery plasma membrane-derived thylakoid membrane plasma membrane region bacterial thylakoid cytoplasm plasma membrane protein complex plasma membrane-derived thylakoid photosystem II
C, X [auth c]	Photosystem II CP43 reaction center protein	chlorophyll binding binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane protein complex protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane protein complex plasma membrane cell periphery plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
PA [auth z], U [auth Z]	Photosystem II reaction center protein Z	-	photosynthesis metabolic process cellular process regulation of biological process regulation of cellular process regulation of photosynthesis photosynthesis, light reaction photosystem II stabilization regulation of photosynthesis, light reaction biological regulation regulation of generation of precursor metabolites and energy generation of precursor metabolites and energy regulation of metabolic process	protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosynthetic membrane thylakoid photosystem II reaction center plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
OA [auth y], T [auth Y]	Photosystem II reaction center protein Ycf12	-	photosynthesis metabolic process cellular process	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane plasma membrane plasma membrane-derived chromatophore thylakoid membrane cell periphery plasma membrane-derived thylakoid membrane plasma membrane region bacterial thylakoid cytoplasm
B, W [auth b]	Photosystem II CP47 reaction center protein	chlorophyll binding binding tetrapyrrole binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane protein complex protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane protein complex plasma membrane cell periphery plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
NA [auth x], S [auth X]	Photosystem II reaction center X protein	-	photosynthesis metabolic process cellular process	protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
MA [auth v], R [auth V]	Cytochrome c-550	binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy cellular respiration energy derivation by oxidation of organic compounds respiratory electron transport chain electron transport chain	protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
LA [auth u], Q [auth U]	Photosystem II 12 kDa extrinsic protein	-	photosynthesis metabolic process cellular process regulation of biological process regulation of cellular process regulation of photosynthesis photosynthesis, light reaction photosystem II stabilization regulation of photosynthesis, light reaction biological regulation regulation of generation of precursor metabolites and energy generation of precursor metabolites and energy regulation of metabolic process	protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region extrinsic component of membrane catalytic complex photosystem II oxygen evolving complex oxidoreductase complex
KA [auth t], P [auth T]	Photosystem II reaction center protein T	-	photosynthesis metabolic process cellular process	protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosynthetic membrane thylakoid photosystem II reaction center plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
JA [auth r], O [auth R]	Photosystem II protein Y	cation binding manganese ion binding transition metal ion binding ion binding binding metal ion binding small molecule binding	photosynthesis metabolic process cellular process	protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
IA [auth q], N [auth Q]	Sll1638 protein	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding	photosynthesis metabolic process cellular process	protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region extrinsic component of membrane catalytic complex photosystem II oxygen evolving complex oxidoreductase complex
HA [auth o], M [auth O]	Photosystem II manganese-stabilizing polypeptide	oxidoreductase activity oxygen evolving activity catalytic activity	photosynthesis protein-containing complex organization photosynthesis, light reaction generation of precursor metabolites and energy photosystem II assembly cellular component organization cellular component biogenesis cellular component assembly protein-containing complex assembly cellular process metabolic process cellular component organization or biogenesis regulation of biological process regulation of cellular process photosynthesis protein-containing complex organization photosynthesis, light reaction generation of precursor metabolites and energy photosystem II assembly cellular component organization cellular component biogenesis cellular component assembly protein-containing complex assembly cellular process metabolic process cellular component organization or biogenesis regulation of biological process regulation of cellular process regulation of photosynthesis photosystem II stabilization regulation of photosynthesis, light reaction biological regulation regulation of generation of precursor metabolites and energy regulation of metabolic process	protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region catalytic complex photosystem II oxygen evolving complex oxidoreductase complex
GA [auth m], L [auth M]	Photosystem II reaction center protein M	-	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
FA [auth l], K [auth L]	Photosystem II reaction center protein L	-	photosynthesis metabolic process cellular process	protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle protein-containing complex intracellular anatomical structure photosystem plasma membrane protein complex photosystem II membrane plasma membrane membrane protein complex intracellular membraneless organelle cell periphery intracellular organelle cellular anatomical structure organelle membraneless organelle plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosynthetic membrane thylakoid photosystem II reaction center plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
EA [auth k], J [auth K]	Photosystem II reaction center protein K	-	photosynthesis metabolic process cellular process	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane protein complex protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane protein complex plasma membrane cell periphery plasma membrane-derived thylakoid photosystem II bacterial thylakoid cytoplasm photosystem II reaction center plasma membrane-derived chromatophore membrane plasma membrane-derived chromatophore thylakoid membrane plasma membrane-derived thylakoid membrane plasma membrane region
A, V [auth a]	Photosystem II protein D1 2	oxidoreductase activity oxygen evolving activity catalytic activity chlorophyll binding binding tetrapyrrole binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor oxidoreductase activity, acting on diphenols and related substances as donors oxidoreductase activity oxygen evolving activity catalytic activity chlorophyll binding binding tetrapyrrole binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor oxidoreductase activity, acting on diphenols and related substances as donors electron transfer activity	response to stimulus response to chemical response to stress response to herbicide response to toxic substance photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex photosystem plasma membrane protein complex photosystem II membrane protein complex plasma membrane-derived thylakoid photosystem II

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
DA [auth j], I [auth J]	IPR002682	Photosystem II PsbJ	Family
DA [auth j], I [auth J]	IPR037267	Photosystem II PsbJ superfamily	Homologous Superfamily
CA [auth i], H [auth I]	IPR037271	Photosystem II PsbI superfamily	Homologous Superfamily
CA [auth i], H [auth I]	IPR003686	Photosystem II PsbI	Family
BA [auth h], G [auth H]	IPR036863	Photosystem II reaction centre protein H superfamily	Homologous Superfamily
BA [auth h], G [auth H]	IPR001056	Photosystem II reaction centre protein H	Family
AA [auth f], F	IPR006241	Photosystem II cytochrome b559, beta subunit	Family
AA [auth f], F	IPR013081	Photosystem II cytochrome b559, N-terminal	Domain
AA [auth f], F	IPR006216	Photosystem II cytochrome b559, conserved site	Conserved Site
E, Z [auth e]	IPR006217	Photosystem II cytochrome b559, alpha subunit	Family
E, Z [auth e]	IPR013082	Photosystem II cytochrome b559, alpha subunit, lumenal region	Domain
E, Z [auth e]	IPR037025	Photosystem II cytochrome b559, alpha subunit superfamily	Homologous Superfamily
E, Z [auth e]	IPR013081	Photosystem II cytochrome b559, N-terminal	Domain
E, Z [auth e]	IPR006216	Photosystem II cytochrome b559, conserved site	Conserved Site
D, Y [auth d]	IPR036854	Photosystem II protein D1/D2 superfamily	Homologous Superfamily
D, Y [auth d]	IPR005868	Photosystem II D2	Family
D, Y [auth d]	IPR000484	Photosynthetic reaction centre, L/M	Family
D, Y [auth d]	IPR055265	Photosynthetic reaction centre, L/M, conserved site	Conserved Site
D, Y [auth d]	IPR055266	Photosystem II protein D1/D2	Family
C, X [auth c]	IPR036001	Photosystem antenna protein-like superfamily	Homologous Superfamily
C, X [auth c]	IPR000932	Photosystem antenna protein-like	Family
C, X [auth c]	IPR005869	Photosystem II CP43 reaction centre protein	Family
C, X [auth c]	IPR044900	Photosystem II CP43 reaction centre protein superfamily	Homologous Superfamily
PA [auth z], U [auth Z]	IPR036512	Photosystem II PsbZ superfamily	Homologous Superfamily
PA [auth z], U [auth Z]	IPR002644	Photosystem II PsbZ, reaction centre	Family
OA [auth y], T [auth Y]	IPR010284	Photosystem II reaction center protein Ycf12	Family
B, W [auth b]	IPR036001	Photosystem antenna protein-like superfamily	Homologous Superfamily
B, W [auth b]	IPR000932	Photosystem antenna protein-like	Family
B, W [auth b]	IPR017486	Photosystem II CP47 reaction centre protein	Family
NA [auth x], S [auth X]	IPR009518	Photosystem II PsbX	Family
NA [auth x], S [auth X]	IPR023431	Photosystem II PsbX, type 1 subfamily	Family
MA [auth v], R [auth V]	IPR017851	Photosystem II extrinsic protein V, cytochrome c-550 precursor	Family
MA [auth v], R [auth V]	IPR016003	Photosystem II extrinsic protein V, cytochrome c-550 precursor-like	Family
MA [auth v], R [auth V]	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
MA [auth v], R [auth V]	IPR009056	Cytochrome c-like domain	Domain
MA [auth v], R [auth V]	IPR029490	Cytochrome c-550 domain	Domain
LA [auth u], Q [auth U]	IPR010527	Photosystem II PsbU, oxygen evolving complex	Family
KA [auth t], P [auth T]	IPR001743	Photosystem II PsbT	Family
KA [auth t], P [auth T]	IPR037268	Photosystem II PsbT superfamily	Homologous Superfamily
JA [auth r], O [auth R]	IPR009388	Photosystem II PsbY	Family
IA [auth q], N [auth Q]	IPR017487	Photosystem II PsbQ, cyanobacteria	Family
IA [auth q], N [auth Q]	IPR008797	Oxygen-evolving enhancer protein 3	Family
IA [auth q], N [auth Q]	IPR023222	PsbQ-like domain superfamily	Homologous Superfamily
HA [auth o], M [auth O]	IPR011250	Outer membrane protein/outer membrane enzyme PagP, beta-barrel	Homologous Superfamily
HA [auth o], M [auth O]	IPR002628	Photosystem II extrinsic protein O	Family
GA [auth m], L [auth M]	IPR007826	Photosystem II PsbM	Family
GA [auth m], L [auth M]	IPR037269	Photosystem II PsbM superfamily	Homologous Superfamily
FA [auth l], K [auth L]	IPR003372	Photosystem II PsbL	Family
FA [auth l], K [auth L]	IPR037266	Photosystem II PsbL superfamily	Homologous Superfamily
EA [auth k], J [auth K]	IPR037270	Photosystem II PsbK superfamily	Homologous Superfamily
EA [auth k], J [auth K]	IPR003687	Photosystem II PsbK	Family
A, V [auth a]	IPR036854	Photosystem II protein D1/D2 superfamily	Homologous Superfamily
A, V [auth a]	IPR005867	Photosystem II protein D1	Family
A, V [auth a]	IPR000484	Photosynthetic reaction centre, L/M	Family
A, V [auth a]	IPR055265	Photosynthetic reaction centre, L/M, conserved site	Conserved Site
A, V [auth a]	IPR055266	Photosystem II protein D1/D2	Family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, AA [auth f], B, BA [auth h], C A, AA [auth f], B, BA [auth h], C, CA [auth i], D, DA [auth j], E, EA [auth k], F, FA [auth l], G [auth H], GA [auth m], H [auth I], HA [auth o], I [auth J], IA [auth q], J [auth K], JA [auth r], K [auth L], KA [auth t], L [auth M], LA [auth u], M [auth O], MA [auth v], N [auth Q], NA [auth x], O [auth R], OA [auth y], P [auth T], PA [auth z], Q [auth U], R [auth V], S [auth X], T [auth Y], U [auth Z], V [auth a], W [auth b], X [auth c], Y [auth d], Z [auth e]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, AA [auth f], B, BA [auth h], C A, AA [auth f], B, BA [auth h], C, CA [auth i], D, DA [auth j], E, EA [auth k], F, FA [auth l], G [auth H], GA [auth m], H [auth I], HA [auth o], I [auth J], IA [auth q], J [auth K], JA [auth r], K [auth L], KA [auth t], L [auth M], LA [auth u], M [auth O], MA [auth v], N [auth Q], NA [auth x], O [auth R], OA [auth y], P [auth T], PA [auth z], Q [auth U], R [auth V], S [auth X], T [auth Y], U [auth Z], V [auth a], W [auth b], X [auth c], Y [auth d], Z [auth e]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Photosystems	Photosystem II, K317A mutant in D2 subunit

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
DA [auth j], I [auth J]	FME	Parent Component: MET RESID: AA0021 , AA0566 PSI-MOD : N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
CA [auth i], H [auth I]	FME	Parent Component: MET RESID: AA0021 , AA0566 , AA0021 , AA0566 PSI-MOD : N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
KA [auth t], P [auth T]	FME	Parent Component: MET RESID: AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566 PSI-MOD : N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
GA [auth m], L [auth M]	FME	Parent Component: MET RESID: AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566 PSI-MOD : N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891