9E51 | pdb_00009e51

Cryo-EM structure of human LPHN2 (ADGRL2)/G13 complex in lipid nanodiscs


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth D]SCOP2B SuperfamilyTransducin (heterotrimeric G protein), gamma chain 8070798 3001771 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth A]PF000027 transmembrane receptor (Secretin family) (7tm_2)7 transmembrane receptor (Secretin family)This family is known as Family B, the secretin-receptor family or family 2 of the G-protein-coupled receptors (GCPRs). They have been described in many animal species, but not in plants, fungi or prokaryotes. Three distinct sub-families are recognise ...This family is known as Family B, the secretin-receptor family or family 2 of the G-protein-coupled receptors (GCPRs). They have been described in many animal species, but not in plants, fungi or prokaryotes. Three distinct sub-families are recognised. Subfamily B1 contains classical hormone receptors, such as receptors for secretin and glucagon, that are all involved in cAMP-mediated signalling pathways. Subfamily B2 contains receptors with long extracellular N-termini, such as the leukocyte cell-surface antigen CD97 (Swiss:P48960); calcium-independent receptors for latrotoxin (such as Swiss:O94910), and brain-specific angiogenesis inhibitors (such as Swiss:O14514) amongst others. Subfamily B3 includes Methuselah and other Drosophila proteins (e.g. Swiss:P83119). Other than the typical seven-transmembrane region, characteristic structural features include an amino-terminal extracellular domain involved in ligand binding, and an intracellular loop (IC3) required for specific G-protein coupling [1].
Domain
B [auth C]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth A]Adhesion G protein-coupled receptor L2
C [auth D]Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
B [auth C]Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
A [auth B]Isoform 2 of Guanine nucleotide-binding protein subunit alpha-13

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth A]IPR003924GPCR, family 2, latrophilinFamily
D [auth A]IPR001879GPCR, family 2, extracellular hormone receptor domainDomain
D [auth A]IPR017983GPCR, family 2, secretin-like, conserved siteConserved Site
D [auth A]IPR003334GPCR, family 2, latrophilin, C-terminalDomain
D [auth A]IPR036445GPCR family 2, extracellular hormone receptor domain superfamilyHomologous Superfamily
D [auth A]IPR000832GPCR, family 2, secretin-likeFamily
D [auth A]IPR043159D-galactoside/L-rhamnose binding SUEL lectin domain superfamilyHomologous Superfamily
D [auth A]IPR032471AGRL2-4 , GAIN subdomain ADomain
D [auth A]IPR000922D-galactoside/L-rhamnose binding SUEL lectin domainDomain
D [auth A]IPR000203GPS motifConserved Site
D [auth A]IPR046338GAIN domain superfamilyHomologous Superfamily
D [auth A]IPR003112Olfactomedin-like domainDomain
D [auth A]IPR057244GAIN, subdomain BDomain
D [auth A]IPR017981GPCR, family 2-like, 7TMDomain
C [auth D]IPR001770G-protein, gamma subunitFamily
C [auth D]IPR015898G-protein, gamma subunit-like domainDomain
C [auth D]IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily
B [auth C]IPR019775WD40 repeat, conserved siteConserved Site
B [auth C]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
B [auth C]IPR001632G-protein beta subunit-like, WD40 repeatsDomain
B [auth C]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B [auth C]IPR016346G-protein subunit beta 1-5Family
B [auth C]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
B [auth C]IPR001680WD40 repeatRepeat
A [auth B]IPR000469G-protein alpha subunit, group 12/13Family
A [auth B]IPR001019Guanine nucleotide binding protein (G-protein), alpha subunitFamily
A [auth B]IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
A [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
D [auth A]PharosO95490
C [auth D]PharosP59768
B [auth C]PharosP62873
A [auth B]PharosQ14344