9E3H | pdb_00009e3h

Cryo EM structure of pertussis toxin in complex with neutralizing Fab PERT-61

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E [auth F]	SCOP2B Superfamily	Bacterial enterotoxins	8041863	3000434	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	Bacterial enterotoxins	8041862	3000434	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Bacterial enterotoxins	8041862	3000434	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth L]	SPRY	e9e3hL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: SPRY	ECOD (v295.2)
H [auth K]	SPRY	e9e3hK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: SPRY	ECOD (v295.2)
J	Asparaginase_2	e9e3hJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Asparaginase_2	ECOD (v295.2)
G [auth H]	PCI	e9e3hH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
F [auth B]	Asparaginase_2	e9e3hB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Asparaginase_2	ECOD (v295.2)
E [auth F]	Asparaginase_2	e9e3hF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Asparaginase_2	ECOD (v295.2)
D [auth E]	PCI	e9e3hE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
C [auth D]	Asparaginase_2	e9e3hD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Asparaginase_2	ECOD (v295.2)
B [auth C]	PCI	e9e3hC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
A	Asparaginase_2	e9e3hA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Asparaginase_2	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth F]	PF09276	Pertussis toxin S5 subunit (Pertus-S5-tox)	Pertussis toxin S5 subunit	Members of this family of Bordetella pertussis toxins adopt a structure consisting of an OB fold, with a closed or partly opened beta-barrel in a Greek-key topology [1].	Domain
B [auth C]	PF02918	Pertussis toxin, subunit 2 and 3, C-terminal domain (Pertussis_S2S3)	Pertussis toxin, subunit 2 and 3, C-terminal domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H [auth K], I [auth L]	PERT-61 LC	-	-	-
G [auth H], J	PERT-61 HC	-	-	-
F [auth B]	Islet-activating protein S2	-	-	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part extracellular region
E [auth F]	Pertussis toxin subunit 5	toxin activity	-	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part extracellular region
C [auth D], D [auth E]	Pertussis toxin subunit 4	toxin activity	-	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part extracellular region
B [auth C]	Pertussis toxin subunit 3	toxin activity	-	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part extracellular region
A	Pertussis toxin subunit 1	pentosyltransferase activity NAD+ poly-ADP-ribosyltransferase activity glycosyltransferase activity transferase activity catalytic activity	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F [auth B]	IPR005138	Aerolysin/Pertussis toxin domain	Domain
F [auth B]	IPR016187	C-type lectin fold	Homologous Superfamily
F [auth B]	IPR037015	Aerolysin/Pertussis toxin (APT), N-terminal domain superfamily	Homologous Superfamily
F [auth B]	IPR008992	Enterotoxin	Homologous Superfamily
F [auth B]	IPR003899	Bordetella pertussis toxin B	Family
F [auth B]	IPR020063	Bordetella pertussis toxin B, subunit 2/3, C-terminal	Domain
E [auth F]	IPR015356	Pertussis toxin, subunit S5	Family
E [auth F]	IPR008992	Enterotoxin	Homologous Superfamily
C [auth D], D [auth E]	IPR015355	Pertussis toxin, subunit S4	Family
C [auth D], D [auth E]	IPR008992	Enterotoxin	Homologous Superfamily
B [auth C]	IPR005138	Aerolysin/Pertussis toxin domain	Domain
B [auth C]	IPR016187	C-type lectin fold	Homologous Superfamily
B [auth C]	IPR037015	Aerolysin/Pertussis toxin (APT), N-terminal domain superfamily	Homologous Superfamily
B [auth C]	IPR008992	Enterotoxin	Homologous Superfamily
B [auth C]	IPR003899	Bordetella pertussis toxin B	Family
B [auth C]	IPR020063	Bordetella pertussis toxin B, subunit 2/3, C-terminal	Domain
A	IPR003898	Pertussis toxin-like	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.