Annotations: 9DLZ

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	Arp2/3 complex 16 kDa subunit ARPC5	8037905	3001882	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Arp2/3 complex subunits	8037903	3000751	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Arp2/3 complex 21 kDa subunit ARPC3	8037901	3001830	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Arp2/3 complex subunits	8037899	3000751	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Arp2/3 complex subunits	8037898	3000751	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8037893	3000092	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-like ATPases	8037891	3000092	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-like ATPases	8037889	3000092	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G	PF04699	ARP2/3 complex 16 kDa subunit (p16-Arc) (P16-Arc)	ARP2/3 complex 16 kDa subunit (p16-Arc)	The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20 ...	The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [1,2].	Domain
F	PF05856	ARP2/3 complex 20 kDa subunit (ARPC4) (ARPC4)	ARP2/3 complex 20 kDa subunit (ARPC4)	-	Family
E	PF04062	ARP2/3 complex ARPC3 (21 kDa) subunit (P21-Arc)	ARP2/3 complex ARPC3 (21 kDa) subunit	-	Family
D	PF04045	Arp2/3 complex, 34 kD subunit p34-Arc (P34-Arc)	Arp2/3 complex, 34 kD subunit p34-Arc	-	Family
C	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
B	PF00022	Actin (Actin)	Actin	-	Family
A	PF00022	Actin (Actin)	Actin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H, I	WASP like actin nucleation promoting factor	cytoskeletal protein binding actin binding protein binding binding	cellular process cell division cellular component organization organelle organization actin cytoskeleton organization actin filament organization actin filament-based process cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle cytoplasm membrane-bounded organelle nucleus intracellular membrane-bounded organelle
G	Actin-related protein 2/3 complex subunit 5	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding	actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization cell migration cell motility regulation of cytoskeleton organization actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization cell migration cell motility regulation of cytoskeleton organization regulation of cellular process regulation of cellular component organization regulation of actin filament-based process regulation of cellular component size cellular component biogenesis regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly regulation of actin filament polymerization regulation of biological quality protein polymerization actin polymerization or depolymerization regulation of biological process regulation of actin filament organization actin filament polymerization protein-containing complex organization biological regulation regulation of actin polymerization or depolymerization regulation of cellular component biogenesis regulation of organelle organization regulation of protein polymerization regulation of actin filament length regulation of actin cytoskeleton organization regulation of supramolecular fiber organization regulation of anatomical structure size	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage chromosome cell projection membrane-bounded organelle nucleus intracellular membrane-bounded organelle
F	Actin-related protein 2/3 complex subunit 4	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding	protein polymerization actin polymerization or depolymerization actin filament polymerization actin cytoskeleton organization protein-containing complex organization actin filament organization cellular component organization cellular component biogenesis organelle organization cellular component assembly protein-containing complex assembly actin filament-based process cellular process cellular component organization or biogenesis protein polymerization actin polymerization or depolymerization actin filament polymerization actin cytoskeleton organization protein-containing complex organization actin filament organization cellular component organization cellular component biogenesis organelle organization cellular component assembly protein-containing complex assembly actin filament-based process cellular process cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization Arp2/3 complex-mediated actin nucleation actin nucleation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage chromosome cell projection membrane-bounded organelle nucleus intracellular membrane-bounded organelle
E	Actin-related protein 2/3 complex subunit 3	cytoskeletal protein binding actin binding protein binding binding	actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization regulation of cytoskeleton organization regulation of cellular process regulation of cellular component organization actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization regulation of cytoskeleton organization regulation of cellular process regulation of cellular component organization regulation of actin filament-based process regulation of cellular component size cellular component biogenesis regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly regulation of actin filament polymerization regulation of biological quality protein polymerization actin polymerization or depolymerization regulation of biological process regulation of actin filament organization actin filament polymerization protein-containing complex organization biological regulation regulation of actin polymerization or depolymerization regulation of cellular component biogenesis regulation of organelle organization regulation of protein polymerization regulation of actin filament length regulation of actin cytoskeleton organization regulation of supramolecular fiber organization regulation of anatomical structure size	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage chromosome cell projection membrane-bounded organelle nucleus intracellular membrane-bounded organelle
D	Actin-related protein 2/3 complex subunit 2	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding structural constituent of cytoskeleton structural molecule activity	actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization positive regulation of organelle organization regulation of cytoskeleton organization regulation of cellular process actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization positive regulation of organelle organization regulation of cytoskeleton organization regulation of cellular process regulation of cellular component organization regulation of actin filament-based process positive regulation of cellular component organization regulation of cellular component size positive regulation of biological process cellular component biogenesis regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly cellular component assembly positive regulation of protein polymerization protein-containing complex assembly regulation of actin filament polymerization regulation of biological quality positive regulation of cellular process protein polymerization actin polymerization or depolymerization regulation of biological process regulation of actin filament organization actin filament polymerization protein-containing complex organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization biological regulation regulation of actin polymerization or depolymerization regulation of cellular component biogenesis positive regulation of supramolecular fiber organization regulation of organelle organization regulation of protein polymerization regulation of actin filament length regulation of actin cytoskeleton organization regulation of supramolecular fiber organization positive regulation of actin filament polymerization regulation of anatomical structure size positive regulation of substrate adhesion-dependent cell spreading regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of substrate adhesion-dependent cell spreading regulation of cell adhesion cell-substrate adhesion cell adhesion positive regulation of cell-substrate adhesion substrate adhesion-dependent cell spreading cell projection organization plasma membrane bounded cell projection assembly regulation of lamellipodium assembly regulation of lamellipodium organization positive regulation of cell projection organization lamellipodium assembly plasma membrane bounded cell projection organization regulation of cell projection organization regulation of cell projection assembly positive regulation of lamellipodium assembly positive regulation of lamellipodium organization regulation of plasma membrane bounded cell projection assembly lamellipodium organization cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle cytosol Arp2/3 protein complex protein-containing complex cytoskeleton membraneless organelle intracellular membraneless organelle actin cytoskeleton synapse transport vesicle membrane presynapse bounding membrane of organelle vesicle membrane synaptic vesicle synaptic vesicle membrane transport vesicle membrane exocytic vesicle membrane cytoplasmic vesicle membrane secretory vesicle organelle membrane exocytic vesicle cell periphery muscle cell projection muscle cell projection membrane plasma membrane plasma membrane region cell projection membrane site of double-strand break site of DNA damage chromosome postsynapse nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen glutamatergic synapse neuron projection
C	Actin-related protein 2/3 complex subunit 1A	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding	actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization	intracellular organelle Arp2/3 protein complex protein-containing complex cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cell periphery cell projection muscle cell projection muscle cell projection membrane intracellular organelle Arp2/3 protein complex protein-containing complex cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cell periphery cell projection muscle cell projection muscle cell projection membrane membrane plasma membrane plasma membrane region cell projection membrane plasma membrane bounded cell projection cytoplasm site of double-strand break site of DNA damage chromosome synapse cell junction glutamatergic synapse membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B	Actin-related protein 2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cytoskeletal protein binding actin binding protein binding	cellular response to stimulus regulation of DNA recombination regulation of cellular process response to stimulus regulation of double-strand break repair regulation of cellular response to stress positive regulation of biological process positive regulation of double-strand break repair via homologous recombination regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of response to stimulus positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress cellular response to stimulus regulation of DNA recombination regulation of cellular process response to stimulus regulation of double-strand break repair regulation of cellular response to stress positive regulation of biological process positive regulation of double-strand break repair via homologous recombination regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of response to stimulus positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress recombinational repair positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process double-strand break repair via homologous recombination positive regulation of cellular process DNA repair positive regulation of DNA recombination double-strand break repair regulation of biological process DNA recombination biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process positive regulation of double-strand break repair regulation of DNA repair regulation of double-strand break repair via homologous recombination positive regulation of DNA metabolic process DNA damage response regulation of response to stimulus metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of cellular component organization positive regulation of cellular component organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component assembly regulation of lamellipodium assembly regulation of lamellipodium organization positive regulation of cell projection organization lamellipodium assembly plasma membrane bounded cell projection organization positive regulation of cellular component biogenesis regulation of cell projection organization regulation of cell projection assembly positive regulation of lamellipodium assembly regulation of cellular component biogenesis positive regulation of lamellipodium organization regulation of plasma membrane bounded cell projection assembly lamellipodium organization cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly	cell periphery cell cortex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cell periphery cell cortex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage chromosome cell projection membrane-bounded organelle nucleus intracellular membrane-bounded organelle
A	Actin-related protein 3	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cytoskeletal protein binding actin binding protein binding	actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process regulation of cellular component organization positive regulation of cellular component organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component assembly regulation of lamellipodium assembly regulation of lamellipodium organization positive regulation of cell projection organization lamellipodium assembly plasma membrane bounded cell projection organization positive regulation of cellular component biogenesis regulation of cell projection organization regulation of cell projection assembly positive regulation of lamellipodium assembly regulation of cellular component biogenesis positive regulation of lamellipodium organization regulation of plasma membrane bounded cell projection assembly lamellipodium organization cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly organelle assembly cilium assembly cilium organization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage chromosome cell projection membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
H, I	IPR000095	CRIB domain	Domain
H, I	IPR011026	Actin nucleation-promoting factor WAS, C-terminal	Homologous Superfamily
H, I	IPR000697	WH1/EVH1 domain	Domain
H, I	IPR036936	CRIB domain superfamily	Homologous Superfamily
H, I	IPR011993	PH-like domain superfamily	Homologous Superfamily
H, I	IPR033927	WASP family, EVH1 domain	Domain
H, I	IPR003124	WH2 domain	Domain
G	IPR006789	Actin-related protein 2/3 complex subunit 5	Family
G	IPR036743	Actin-related protein 2/3 complex subunit 5 superfamily	Homologous Superfamily
F	IPR034666	Arp2/3 complex subunit 2/4	Homologous Superfamily
F	IPR008384	Actin-related protein 2/3 complex subunit 4	Family
E	IPR036753	Actin-related protein 2/3 complex subunit 3 superfamily	Homologous Superfamily
E	IPR007204	Actin-related protein 2/3 complex subunit 3	Family
D	IPR034666	Arp2/3 complex subunit 2/4	Homologous Superfamily
D	IPR007188	Actin-related protein 2/3 complex subunit 2	Family
C	IPR017383	Actin-related protein 2/3 complex subunit 1	Family
C	IPR001680	WD40 repeat	Repeat
C	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
C	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B	IPR020902	Actin/actin-like conserved site	Conserved Site
B	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
B	IPR004000	Actin family	Family
A	IPR020902	Actin/actin-like conserved site	Conserved Site
A	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
A	IPR004000	Actin family	Family