9DDB | pdb_00009ddb

Cryo-EM structure of gB-Ecto.516P.531E, a prefusion-stabilized HSV-1 glycoprotein B extracellular domain

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth C]SCOP2B SuperfamilyViral glycoprotein ectodomain-like 8098472 3001498 SCOP2B (2022-06-29)
B [auth D]SCOP2B SuperfamilyViral glycoprotein ectodomain-like 8098472 3001498 SCOP2B (2022-06-29)
C [auth E]SCOP2B SuperfamilyViral glycoprotein ectodomain-like 8098472 3001498 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth C],
B [auth D],
C [auth E]		PF17417Herpesvirus Glycoprotein B PH-like domain (Glycoprot_B_PH2)Herpesvirus Glycoprotein B PH-like domainThis domain corresponds to the second PH-like domain in herpesvirus glycoprotein B. Domain
A [auth C],
B [auth D],
C [auth E]		PF17416Herpesvirus Glycoprotein B (Glycoprot_B_PH1)Herpesvirus Glycoprotein BThis domain has a PH-like fold. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C],
B [auth D],
C [auth E]		Glycoprotein B-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth C],
B [auth D],
C [auth E]		IPR035381Herpesvirus Glycoprotein B, PH-like domain 2Domain
A [auth C],
B [auth D],
C [auth E]		IPR035377Herpesvirus Glycoprotein B, PH-like domain 1Domain
A [auth C],
B [auth D],
C [auth E]		IPR055341Herpesvirus glycoprotein B ectodomain C-terminalDomain
A [auth C],
B [auth D],
C [auth E]		IPR000234Herpesvirus Glycoprotein BFamily
A [auth C],
B [auth D],
C [auth E]		IPR038631Herpesvirus Glycoprotein B, PH-like domain 2 superfamilyHomologous Superfamily