Crystal Structure of the Substrate Binding Domain Protein of the ABC Transporter PBP2_YxeM from Vibrio cholerae
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I | Gal-bind_lectin | e9d5wI1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Gal-bind_lectin | ECOD (v295) |
| H | Gal-bind_lectin | e9d5wH1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Gal-bind_lectin | ECOD (v295) |
| G | Gal-bind_lectin | e9d5wG1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Gal-bind_lectin | ECOD (v295) |
| F | Gal-bind_lectin | e9d5wF1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Gal-bind_lectin | ECOD (v295) |
| E | Gal-bind_lectin | e9d5wE1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Gal-bind_lectin | ECOD (v295) |
| D | Gal-bind_lectin | e9d5wD1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Gal-bind_lectin | ECOD (v295) |
| C | Gal-bind_lectin | e9d5wC1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Gal-bind_lectin | ECOD (v295) |
| B | Gal-bind_lectin | e9d5wB1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Gal-bind_lectin | ECOD (v295) |
| A | TRIF-NTD | e9d5wA01 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: TRIF-NTD | ECOD (v295) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00497 | Bacterial extracellular solute-binding proteins, family 3 (SBP_bac_3) | Bacterial extracellular solute-binding proteins, family 3 | This is a sensor domain found in solute-binding protein family 3 members from Gram-positive bacteria, Gram-negative bacteria and archaea. It can also be found in the N-terminal of the membrane-bound lytic murein transglycosylase F (MltF) protein. Thi ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Amino acid ABC transporter, periplasmic amino acid-binding portion | - | - |














