Crystal Structure of the Substrate Binding Domain Protein of the ABC Transporter PBP2_YxeM from Vibrio cholerae


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IGal-bind_lectine9d5wI1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Gal-bind_lectinECOD (v295)
HGal-bind_lectine9d5wH1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Gal-bind_lectinECOD (v295)
GGal-bind_lectine9d5wG1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Gal-bind_lectinECOD (v295)
FGal-bind_lectine9d5wF1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Gal-bind_lectinECOD (v295)
EGal-bind_lectine9d5wE1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Gal-bind_lectinECOD (v295)
DGal-bind_lectine9d5wD1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Gal-bind_lectinECOD (v295)
CGal-bind_lectine9d5wC1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Gal-bind_lectinECOD (v295)
BGal-bind_lectine9d5wB1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Gal-bind_lectinECOD (v295)
ATRIF-NTDe9d5wA01 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: TRIF-NTDECOD (v295)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00497Bacterial extracellular solute-binding proteins, family 3 (SBP_bac_3)Bacterial extracellular solute-binding proteins, family 3This is a sensor domain found in solute-binding protein family 3 members from Gram-positive bacteria, Gram-negative bacteria and archaea. It can also be found in the N-terminal of the membrane-bound lytic murein transglycosylase F (MltF) protein. Thi ...This is a sensor domain found in solute-binding protein family 3 members from Gram-positive bacteria, Gram-negative bacteria and archaea. It can also be found in the N-terminal of the membrane-bound lytic murein transglycosylase F (MltF) protein. This domain recognises Nicotinate, quidalnate, pyridine-2,5-dicarboxylate and salicylate [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Amino acid ABC transporter, periplasmic amino acid-binding portion- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR018313Solute-binding protein family 3, conserved siteConserved Site
A, B, C, D, E
IPR001638Solute-binding protein family 3/N-terminal domain of MltFDomain