9D2Z | pdb_00009d2z

Cryo-EM structure of mycocerosic acid synthase with single KS-ACP crosslink using C16 alpha-bromoamide. Complex B

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF02801	Beta-ketoacyl synthase, C-terminal domain (Ketoacyl-synt_C)	Beta-ketoacyl synthase, C-terminal domain	The structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.	Domain
A, B, C	PF00109	Beta-ketoacyl synthase, N-terminal domain (ketoacyl-synt)	Beta-ketoacyl synthase, N-terminal domain	The structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains m ...	The structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine [1].	Domain
A, B, C	PF16197	Ketoacyl-synthetase C-terminal extension (KAsynt_C_assoc)	Ketoacyl-synthetase C-terminal extension	-	Family
A, B, C	PF00550	Phosphopantetheine attachment site (PP-binding)	Phosphopantetheine attachment site	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.	Domain
A, B, C	PF00698	Acyl transferase domain (Acyl_transf_1)	Acyl transferase domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Mycocerosic acid synthase	oxidoreductase activity catalytic activity vitamin binding amide binding modified amino acid binding binding phosphopantetheine binding small molecule binding acyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity fatty acid synthase activity mycocerosate synthase activity	cellular component biogenesis cellular component organization peptidoglycan-based cell wall biogenesis cellular component assembly cell wall biogenesis DIM/DIP cell wall layer assembly cell wall organization or biogenesis cellular process Actinobacterium-type cell wall biogenesis cellular component organization or biogenesis fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process cellular component biogenesis cellular component organization peptidoglycan-based cell wall biogenesis cellular component assembly cell wall biogenesis DIM/DIP cell wall layer assembly cell wall organization or biogenesis cellular process Actinobacterium-type cell wall biogenesis cellular component organization or biogenesis fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process monocarboxylic acid metabolic process lipid metabolic process	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	Homologous Superfamily
A, B, C	IPR014031	Beta-ketoacyl synthase, C-terminal	Domain
A, B, C	IPR006162	Phosphopantetheine attachment site	PTM
A, B, C	IPR013154	Alcohol dehydrogenase-like, N-terminal	Domain
A, B, C	IPR057326	Ketoreductase domain	Domain
A, B, C	IPR053386	Methyl-branched fatty acid synthase	Family
A, B, C	IPR049552	Polyketide synthase, dehydratase domain, N-terminal	Domain
A, B, C	IPR049900	Polyketide synthase, dehydratase domain	Domain
A, B, C	IPR049551	Polyketide synthase, dehydratase domain, C-terminal	Domain
A, B, C	IPR016036	Malonyl-CoA ACP transacylase, ACP-binding	Homologous Superfamily
A, B, C	IPR050091	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Family
A, B, C	IPR020841	Polyketide synthase, beta-ketoacyl synthase domain	Domain
A, B, C	IPR020807	Polyketide/metazoan fatty acid synthase-like, dehydratase domain	Domain
A, B, C	IPR036736	ACP-like superfamily	Homologous Superfamily
A, B, C	IPR014043	Acyl transferase domain	Domain
A, B, C	IPR020843	Enoylreductase domain	Domain
A, B, C	IPR032821	Polyketide synthase, C-terminal extension	Domain
A, B, C	IPR011032	GroES-like superfamily	Homologous Superfamily
A, B, C	IPR009081	Phosphopantetheine binding ACP domain	Domain
A, B, C	IPR020806	Polyketide synthase-like, phosphopantetheine-binding domain	Domain
A, B, C	IPR013968	Polyketide synthase-like, ketoreductase domain	Domain
A, B, C	IPR016039	Thiolase-like	Homologous Superfamily
A, B, C	IPR001227	Acyl transferase domain superfamily	Homologous Superfamily
A, B, C	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C	IPR018201	Beta-ketoacyl synthase, active site	Active Site
A, B, C	IPR014030	Beta-ketoacyl synthase-like, N-terminal	Domain
A, B, C	IPR042104	Polyketide synthase, dehydratase domain superfamily	Homologous Superfamily