9CZ5 | pdb_00009cz5

Crystal structure (II) of human farnesyl pyrophosphate synthase in complex with a cryptic pocket ligand, CL03049

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth F]	SCOP2B Superfamily	Terpenoid synthases	8073826	3001615	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth F]	PCI	e9cz5F1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth F]	PF00348	Polyprenyl synthetase (polyprenyl_synt)	Polyprenyl synthetase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth F]	Farnesyl pyrophosphate synthase	prenyl diphosphate synthase activity dimethylallyltranstransferase activity prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity (2E,6E)-farnesyl diphosphate synthase activity RNA binding binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	secondary alcohol biosynthetic process small molecule biosynthetic process sterol metabolic process steroid metabolic process zymosterol biosynthetic process lipid biosynthetic process alcohol metabolic process primary metabolic process secondary alcohol metabolic process biosynthetic process sterol biosynthetic process zymosterol metabolic process alcohol biosynthetic process small molecule metabolic process secondary alcohol biosynthetic process small molecule biosynthetic process sterol metabolic process steroid metabolic process zymosterol biosynthetic process lipid biosynthetic process alcohol metabolic process primary metabolic process secondary alcohol metabolic process biosynthetic process sterol biosynthetic process zymosterol metabolic process alcohol biosynthetic process small molecule metabolic process metabolic process cellular process steroid biosynthetic process lipid metabolic process isoprenoid biosynthetic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process trans, trans-farnesyl diphosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process dimethylallyl diphosphate metabolic process phosphorus metabolic process terpenoid metabolic process isoprenoid metabolic process geranyl diphosphate biosynthetic process geranyl diphosphate metabolic process geranylgeranyl diphosphate biosynthetic process geranylgeranyl diphosphate metabolic process cholesterol biosynthetic process cholesterol metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle peroxisome microbody cytoplasm intracellular membrane-bounded organelle cytosol mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle peroxisome microbody cytoplasm intracellular membrane-bounded organelle cytosol mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth F]	IPR039702	Farnesyl pyrophosphate synthase-like	Family
A [auth F]	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
A [auth F]	IPR033749	Polyprenyl synthetase, conserved site	Conserved Site
A [auth F]	IPR000092	Polyprenyl synthetase-like	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth F]	: P14324	porokeratosis 9, multiple types osteoporosis Crohn disease plasma cell myeloma Porokeratosis, Disseminated Superficial Actinic Sjogren syndrome acute myeloid leukemia brain aneurysm ductal breast carcinoma in situ Lewy body dementia pancreatic intraductal papillary-mucinous carcinoma porokeratosis postmenopausal osteoporosis gastric adenocarcinoma hypercalcemia disease porokeratosis 9, multiple types osteoporosis Crohn disease plasma cell myeloma Porokeratosis, Disseminated Superficial Actinic Sjogren syndrome acute myeloid leukemia brain aneurysm ductal breast carcinoma in situ Lewy body dementia pancreatic intraductal papillary-mucinous carcinoma porokeratosis postmenopausal osteoporosis gastric adenocarcinoma hypercalcemia disease osteosarcoma pancreatic intraductal papillary-mucinous neoplasm bone Paget disease disseminated superficial actinic porokeratosis ovarian cancer

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.