9CRX | pdb_00009crx

Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 3


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
LSCOP2B SuperfamilySNARE fusion complex 8038830 3001549 SCOP2B (2022-06-29)
KSCOP2B SuperfamilySNARE fusion complex 8038826 3001549 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySNARE fusion complex 8038825 3001549 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyTPR-like 8038649 3001345 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyTPR-like 8038649 3001345 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyTPR-like 8038649 3001345 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyADC-like 8042532 3001132 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCdc48 domain 2-like 8034902 3000725 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCdc48 domain 2-like 8034902 3000725 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyADC-like 8042532 3001132 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyADC-like 8042532 3001132 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCdc48 domain 2-like 8034902 3000725 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF05739SNARE domain (SNARE)SNARE domainMost if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE dom ...Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. It is composed of about 70 amino acids arranged in an alpha-helical structure [1].
Domain
G, H, I
PF14938Soluble NSF attachment protein, SNAP (SNAP)Soluble NSF attachment protein, SNAP- Repeat
A, B, C, D, E
PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
A, B, C, D, E
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
A, B, C, D, E
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Protein transport protein SEC9
Protein SSO1
Synaptobrevin homolog 1
G, H, I
Alpha-soluble NSF attachment protein
A, B, C, D, E
Vesicular-fusion protein SEC18

InterPro: Protein Family Classification InterPro Database Homepage