9CRU | pdb_00009cru

Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyCdc48 domain 2-like 8034902 3000725 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyADC-like 8042532 3001132 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyADC-like 8042532 3001132 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCdc48 domain 2-like 8034902 3000725 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCdc48 domain 2-like 8034902 3000725 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyADC-like 8042532 3001132 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyTPR-like 8038649 3001345 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyTPR-like 8038649 3001345 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilySNARE fusion complex 8038825 3001549 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilySNARE fusion complex 8038826 3001549 SCOP2B (2022-06-29)
J [auth K]SCOP2B Superfamilyt-snare proteins 8037586 3000366 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilySNARE fusion complex 8038830 3001549 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
A, B, C, D, E
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
A, B, C, D, E
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
G, H
PF14938Soluble NSF attachment protein, SNAP (SNAP)Soluble NSF attachment protein, SNAP- Repeat
I [auth J]PF00957Synaptobrevin (Synaptobrevin)SynaptobrevinThe entry represents the entire v-SNARE coiled-coil homology domain. The process of vesicular membrane fusion in eukaryotic cells depends on a conserved fusion machinery called SNARE (soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein ...The entry represents the entire v-SNARE coiled-coil homology domain. The process of vesicular membrane fusion in eukaryotic cells depends on a conserved fusion machinery called SNARE (soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors). In the process of vesicle docking, proteins present on the vesicle (v-SNARE) have to bind to their counterpart on the target membrane (t-SNARE) to form a core complex that can then recruit the soluble proteins NSF and SNAP This so called fusion complex can then disassemble after ATP hydrolysis mediated by the ATPase NSF in a process that leads to membrane fusion and the release of the vesicle contents. v-SNAREs include proteins homologous to synaptobrevi [1, 2, 3].
Domain
J [auth K]PF05739SNARE domain (SNARE)SNARE domainMost if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE dom ...Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. It is composed of about 70 amino acids arranged in an alpha-helical structure [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Vesicular-fusion protein SEC18
G, H
Alpha-soluble NSF attachment protein
I [auth J]Synaptobrevin homolog 1
J [auth K]Protein SSO1
K [auth L]Protein transport protein SEC9

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR004201CDC48, domain 2Domain
A, B, C, D, E
IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR003593AAA+ ATPase domainDomain
A, B, C, D, E
IPR003959ATPase, AAA-type, coreDomain
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C, D, E
IPR029067CDC48 domain 2-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR041569AAA ATPase, AAA+ lid domainDomain
A, B, C, D, E
IPR039812Vesicle-fusing ATPaseFamily
A, B, C, D, E
IPR003960ATPase, AAA-type, conserved siteConserved Site
A, B, C, D, E
IPR003338CDC48, N-terminal subdomainDomain
G, H
IPR000744NSF attachment proteinFamily
G, H
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
I [auth J]IPR001388Synaptobrevin-likeFamily
I [auth J]IPR016444Synaptobrevin/Vesicle-associated membrane proteinFamily
I [auth J]IPR042855v-SNARE, coiled-coil homology domainDomain
J [auth K]IPR000727Target SNARE coiled-coil homology domainDomain
J [auth K]IPR006012Syntaxin/epimorphin, conserved siteConserved Site
J [auth K]IPR010989SNAREHomologous Superfamily
J [auth K]IPR006011Syntaxin, N-terminal domainDomain
J [auth K]IPR045242SyntaxinFamily
K [auth L]IPR000727Target SNARE coiled-coil homology domainDomain