9CI3 | pdb_00009ci3

Structure of the LRRK2/14-3-3 complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth A]SCOP2B SuperfamilyRas-like P-loop GTPases 8092960 3002022 SCOP2B (2022-06-29)
BSCOP2B Superfamily14-3-3 protein 8082813 3001329 SCOP2B (2022-06-29)
A [auth C]SCOP2B Superfamily14-3-3 protein 8082813 3001329 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth A]PF13855Leucine rich repeat (LRR_8)Leucine rich repeat- Repeat
C [auth A]PF16095C-terminal of Roc, COR-A domain (COR-A)C-terminal of Roc, COR-A domainThe C-terminal of Roc domain, COR, along with Roc functions as the putative regulator of kinase activity. It functions as a proper GTP-binding protein with a low GTPase activity somehow stimulating the kinase activity [1]. COR is divided in two subdo ...The C-terminal of Roc domain, COR, along with Roc functions as the putative regulator of kinase activity. It functions as a proper GTP-binding protein with a low GTPase activity somehow stimulating the kinase activity [1]. COR is divided in two subdomains: COR-A and COR-B. This entry corresponds to COR-A, located at the N-terminal of COR. It interacts with the Roc domain stabilising the GTPase activity of LRRK2 [2]. COR-A consists of multiple alpha-helices and a short three-stranded antiparallel sheet [3].
Domain
C [auth A]PF08477Ras of Complex, Roc, domain of DAPkinase (Roc)Ras of Complex, Roc, domain of DAPkinaseRoc, or Ras of Complex, proteins are mitochondrial Rho proteins (Miro-1, Swiss:Q8IXI2, and Miro-2, Swiss:Q8IXI1) and atypical Rho GTPases. Full-length proteins have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains ...Roc, or Ras of Complex, proteins are mitochondrial Rho proteins (Miro-1, Swiss:Q8IXI2, and Miro-2, Swiss:Q8IXI1) and atypical Rho GTPases. Full-length proteins have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (Pfam:PF00036) that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis [1,2,3,4].
Domain
C [auth A]PF00069Protein kinase domain (Pkinase)Protein kinase domainDomain
A [auth C],
B
PF0024414-3-3 protein (14-3-3)14-3-3 protein- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth A]Leucine-rich repeat serine/threonine-protein kinase 2
A [auth C],
B
14-3-3 protein gamma

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth A]IPR032171C-terminal of Roc, COR-A domainDomain
C [auth A]IPR016024Armadillo-type foldHomologous Superfamily
C [auth A]IPR000719Protein kinase domainDomain
C [auth A]IPR020859Roc domainDomain
C [auth A]IPR017441Protein kinase, ATP binding siteBinding Site
C [auth A]IPR056597LRRK2, ARM repeat domainDomain
C [auth A]IPR036770Ankyrin repeat-containing domain superfamilyHomologous Superfamily
C [auth A]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
C [auth A]IPR056593LRRK2, ANK repeat domainDomain
C [auth A]IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
C [auth A]IPR008271Serine/threonine-protein kinase, active siteActive Site
C [auth A]IPR051420Ser/Thr Protein Kinases with Diverse Regulatory RolesFamily
C [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth A]IPR001611Leucine-rich repeatRepeat
C [auth A]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C [auth A]IPR056602LRRK2, beta-propellerDomain
C [auth A]IPR003591Leucine-rich repeat, typical subtypeRepeat
C [auth A]IPR011989Armadillo-like helicalHomologous Superfamily
C [auth A]IPR005225Small GTP-binding domainDomain
C [auth A]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
A [auth C],
B
IPR02340914-3-3 protein, conserved siteConserved Site
A [auth C],
B
IPR02341014-3-3 domainDomain
A [auth C],
B
IPR03681514-3-3 domain superfamilyHomologous Superfamily
A [auth C],
B
IPR00030814-3-3 proteinFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
C [auth A]PharosQ5S007
A [auth C],
B
PharosP61981

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
C [auth A]SEP Parent Component: SER

RESIDAA0037

PSI-MOD :  O-phospho-L-serine MOD:00046