9CI2 | pdb_00009ci2

Anthoceros agrestis Rubisco octamer core complexed with small subunits and Arabidopsis thaliana BSD2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth 4]	SCOP2B Superfamily	DnaJ/Hsp40 cysteine-rich domain-like	8102247	3001550	SCOP2B (2022-06-29)
C [auth 3]	SCOP2B Superfamily	DnaJ/Hsp40 cysteine-rich domain-like	8102247	3001550	SCOP2B (2022-06-29)
B [auth 2]	SCOP2B Superfamily	DnaJ/Hsp40 cysteine-rich domain-like	8102247	3001550	SCOP2B (2022-06-29)
A [auth 1]	SCOP2B Superfamily	DnaJ/Hsp40 cysteine-rich domain-like	8102247	3001550	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 1], B [auth 2], C [auth 3], D [auth 4]	PF25436	BSD2 cysteine rich domain (BSD2_CRD)	BSD2 cysteine rich domain	This domain is found in the chloroplastic Protein BUNDLE SHEATH DEFECTIVE 2 (BSD2) from Arabidopsis thaliana and related proteins. BSD2 is a chloroplast chaperone required for RuBisCo biogenesis and translational regulation of the RuBisCo large subun ...	This domain is found in the chloroplastic Protein BUNDLE SHEATH DEFECTIVE 2 (BSD2) from Arabidopsis thaliana and related proteins. BSD2 is a chloroplast chaperone required for RuBisCo biogenesis and translational regulation of the RuBisCo large subunit [1]. It has a role in stabilizing an end-state assembly intermediate of eight RuBisCo large subunits until the small subunits become available. The structure of this domain has been determined and it has a hairpin architecture arranged around two Zn atoms, each coordinated by four cysteines [1]. Members with this domain contain a highly conserved CxxCxGxG sequence motif.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M [auth I], N [auth J], O [auth K], P [auth L]	Rubisco small subunit	-	-	-
E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth H]	Rubisco large subunit	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity monooxygenase activity oxidoreductase activity	metabolic compound salvage biosynthetic process metabolic process cellular process photorespiration carbohydrate metabolic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
A [auth 1], B [auth 2], C [auth 3], D [auth 4]	Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic	protein folding chaperone cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	cellular component organization cellular component biogenesis cellular component assembly ribulose bisphosphate carboxylase complex assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis protein folding biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process cellular component organization cellular component biogenesis cellular component assembly ribulose bisphosphate carboxylase complex assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis protein folding biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex protein folding chaperone complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle plastid organelle intracellular membrane-bounded organelle chloroplast plastid stroma cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex protein folding chaperone complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle plastid organelle intracellular membrane-bounded organelle chloroplast plastid stroma chloroplast stroma

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth H]	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth H]	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth H]	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth H]	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth H]	IPR033966	RuBisCO	Family
E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth H]	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain
E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], J [auth F], K [auth G], L [auth H]	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily
A [auth 1], B [auth 2], C [auth 3], D [auth 4]	IPR057453	BSD2, cysteine rich domain	Domain
A [auth 1], B [auth 2], C [auth 3], D [auth 4]	IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.