9CGM | pdb_00009cgm

The Structure of Spiroplasma Virus 4

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth Z], AB [auth z], BA [auth a], BB [auth 1], A, AA [auth Z], AB [auth z], BA [auth a], BB [auth 1], C [auth B], CA [auth b], CB [auth 2], D [auth C], DA [auth c], DB [auth 3], E [auth D], EA [auth d], EB [auth 4], F [auth E], FA [auth e], FB [auth 5], G [auth F], GA [auth f], GB [auth 6], H [auth G], HA [auth g], HB [auth 7], I [auth H], IA [auth h], IB [auth 8], J [auth I], JA [auth i], K [auth J], KA [auth j], L [auth K], LA [auth k], M [auth L], MA [auth l], N [auth M], NA [auth m], O [auth N], OA [auth n], P [auth O], PA [auth o], Q [auth P], QA [auth p], R [auth Q], RA [auth q], S [auth R], SA [auth r], T [auth S], TA [auth s], U [auth T], UA [auth t], V [auth U], VA [auth u], W [auth V], WA [auth v], X [auth W], XA [auth w], Y [auth X], YA [auth x], Z [auth Y], ZA [auth y]	PF02305	Capsid protein (F protein) (Phage_F)	Capsid protein (F protein)	This is a family of proteins from single-stranded DNA bacteriophages. Protein F is the major capsid component, sixty copies of which are found in the virion.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AC [auth S2], AD [auth s2], B [auth 0], BC [auth T2], BD [auth t2], AC [auth S2], AD [auth s2], B [auth 0], BC [auth T2], BD [auth t2], CC [auth U2], CD [auth u2], DC [auth V2], DD [auth v2], EC [auth W2], ED [auth w2], FC [auth X2], FD [auth x2], GC [auth Y2], GD [auth y2], HC [auth Z2], HD [auth z2], IC [auth a2], ID [auth 12], JB [auth 9], JC [auth b2], JD [auth 22], KB [auth C2], KC [auth c2], KD [auth 32], LB [auth D2], LC [auth d2], LD [auth 42], MB [auth E2], MC [auth e2], MD [auth 52], NB [auth F2], NC [auth f2], ND [auth 62], OB [auth G2], OC [auth g2], OD [auth 72], PB [auth H2], PC [auth h2], PD [auth 82], QB [auth I2], QC [auth i2], RB [auth J2], RC [auth j2], SB [auth K2], SC [auth k2], TB [auth L2], TC [auth l2], UB [auth M2], UC [auth m2], VB [auth N2], VC [auth n2], WB [auth O2], WC [auth o2], XB [auth P2], XC [auth p2], YB [auth Q2], YC [auth q2], ZB [auth R2], ZC [auth r2]	DNA binding protein ORF8	DNA binding binding nucleic acid binding	-	viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part
A, AA [auth Z], AB [auth z], BA [auth a], BB [auth 1], A, AA [auth Z], AB [auth z], BA [auth a], BB [auth 1], C [auth B], CA [auth b], CB [auth 2], D [auth C], DA [auth c], DB [auth 3], E [auth D], EA [auth d], EB [auth 4], F [auth E], FA [auth e], FB [auth 5], G [auth F], GA [auth f], GB [auth 6], H [auth G], HA [auth g], HB [auth 7], I [auth H], IA [auth h], IB [auth 8], J [auth I], JA [auth i], K [auth J], KA [auth j], L [auth K], LA [auth k], M [auth L], MA [auth l], N [auth M], NA [auth m], O [auth N], OA [auth n], P [auth O], PA [auth o], Q [auth P], QA [auth p], R [auth Q], RA [auth q], S [auth R], SA [auth r], T [auth S], TA [auth s], U [auth T], UA [auth t], V [auth U], VA [auth u], W [auth V], WA [auth v], X [auth W], XA [auth w], Y [auth X], YA [auth x], Z [auth Y], ZA [auth y]	Capsid protein VP1	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth Z], AB [auth z], BA [auth a], BB [auth 1], A, AA [auth Z], AB [auth z], BA [auth a], BB [auth 1], C [auth B], CA [auth b], CB [auth 2], D [auth C], DA [auth c], DB [auth 3], E [auth D], EA [auth d], EB [auth 4], F [auth E], FA [auth e], FB [auth 5], G [auth F], GA [auth f], GB [auth 6], H [auth G], HA [auth g], HB [auth 7], I [auth H], IA [auth h], IB [auth 8], J [auth I], JA [auth i], K [auth J], KA [auth j], L [auth K], LA [auth k], M [auth L], MA [auth l], N [auth M], NA [auth m], O [auth N], OA [auth n], P [auth O], PA [auth o], Q [auth P], QA [auth p], R [auth Q], RA [auth q], S [auth R], SA [auth r], T [auth S], TA [auth s], U [auth T], UA [auth t], V [auth U], VA [auth u], W [auth V], WA [auth v], X [auth W], XA [auth w], Y [auth X], YA [auth x], Z [auth Y], ZA [auth y]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth Z], AB [auth z], BA [auth a], BB [auth 1], A, AA [auth Z], AB [auth z], BA [auth a], BB [auth 1], C [auth B], CA [auth b], CB [auth 2], D [auth C], DA [auth c], DB [auth 3], E [auth D], EA [auth d], EB [auth 4], F [auth E], FA [auth e], FB [auth 5], G [auth F], GA [auth f], GB [auth 6], H [auth G], HA [auth g], HB [auth 7], I [auth H], IA [auth h], IB [auth 8], J [auth I], JA [auth i], K [auth J], KA [auth j], L [auth K], LA [auth k], M [auth L], MA [auth l], N [auth M], NA [auth m], O [auth N], OA [auth n], P [auth O], PA [auth o], Q [auth P], QA [auth p], R [auth Q], RA [auth q], S [auth R], SA [auth r], T [auth S], TA [auth s], U [auth T], UA [auth t], V [auth U], VA [auth u], W [auth V], WA [auth v], X [auth W], XA [auth w], Y [auth X], YA [auth x], Z [auth Y], ZA [auth y]	IPR003514	Microviridae F protein	Family
A, AA [auth Z], AB [auth z], BA [auth a], BB [auth 1], A, AA [auth Z], AB [auth z], BA [auth a], BB [auth 1], C [auth B], CA [auth b], CB [auth 2], D [auth C], DA [auth c], DB [auth 3], E [auth D], EA [auth d], EB [auth 4], F [auth E], FA [auth e], FB [auth 5], G [auth F], GA [auth f], GB [auth 6], H [auth G], HA [auth g], HB [auth 7], I [auth H], IA [auth h], IB [auth 8], J [auth I], JA [auth i], K [auth J], KA [auth j], L [auth K], LA [auth k], M [auth L], MA [auth l], N [auth M], NA [auth m], O [auth N], OA [auth n], P [auth O], PA [auth o], Q [auth P], QA [auth p], R [auth Q], RA [auth q], S [auth R], SA [auth r], T [auth S], TA [auth s], U [auth T], UA [auth t], V [auth U], VA [auth u], W [auth V], WA [auth v], X [auth W], XA [auth w], Y [auth X], YA [auth x], Z [auth Y], ZA [auth y]	IPR037002	Microviridae F protein superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.