9C9M | pdb_00009c9m

HIV-1 intasome core bound with DTG

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth K]SCOP2B SuperfamilyRibonuclease H-like 8044526 3000143 SCOP2B (2022-06-29)
G [auth K]SCOP2B SuperfamilyN-terminal Zn binding domain of HIV integrase-like 8037847 3001203 SCOP2B (2022-06-29)
F [auth I]SCOP2B SuperfamilyN-terminal Zn binding domain of HIV integrase-like 8037847 3001203 SCOP2B (2022-06-29)
F [auth I]SCOP2B SuperfamilyRibonuclease H-like 8044526 3000143 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyN-terminal Zn binding domain of HIV integrase-like 8037847 3001203 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRibonuclease H-like 8044526 3000143 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyN-terminal Zn binding domain of HIV integrase-like 8037847 3001203 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRibonuclease H-like 8044526 3000143 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth D],
H [auth M]		Integrase
D [auth E],
I [auth N]		viral DNA---
E [auth F],
J [auth O]		vDNA---
Integrase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth D],
H [auth M]		IPR036397Ribonuclease H superfamilyHomologous Superfamily
C [auth D],
H [auth M]		IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth D],
H [auth M]		IPR001995Peptidase A2A, retrovirus, catalyticDomain
C [auth D],
H [auth M]		IPR001878Zinc finger, CCHC-typeDomain
C [auth D],
H [auth M]		IPR008919Retrovirus capsid, N-terminalHomologous Superfamily
C [auth D],
H [auth M]		IPR012344Matrix protein, lentiviral and alpha-retroviral, N-terminalHomologous Superfamily
C [auth D],
H [auth M]		IPR036862Integrase, C-terminal domain superfamily, retroviralHomologous Superfamily
C [auth D],
H [auth M]		IPR018061RetropepsinsDomain
C [auth D],
H [auth M]		IPR010661Reverse transcriptase thumbDomain
C [auth D],
H [auth M]		IPR002156Ribonuclease H domainDomain
C [auth D],
H [auth M]		IPR036875Zinc finger, CCHC-type superfamilyHomologous Superfamily
C [auth D],
H [auth M]		IPR003308Integrase, N-terminal zinc-binding domainDomain
C [auth D],
H [auth M]		IPR001584Integrase, catalytic coreDomain
C [auth D],
H [auth M]		IPR045345Retroviral nucleocapsid Gag protein p24, C-terminal domainDomain
C [auth D],
H [auth M]		IPR010999Retroviral matrix proteinHomologous Superfamily
C [auth D],
H [auth M]		IPR021109Aspartic peptidase domain superfamilyHomologous Superfamily
C [auth D],
H [auth M]		IPR001969Aspartic peptidase, active siteActive Site
C [auth D],
H [auth M]		IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
C [auth D],
H [auth M]		IPR017856Integrase-like, N-terminalHomologous Superfamily
C [auth D],
H [auth M]		IPR000071Immunodeficiency lentiviral matrix, N-terminalDomain
C [auth D],
H [auth M]		IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth D],
H [auth M]		IPR001037Integrase, C-terminal, retroviralDomain
C [auth D],
H [auth M]		IPR034170Retropepsin-like catalytic domainDomain
C [auth D],
H [auth M]		IPR000477Reverse transcriptase domainDomain
C [auth D],
H [auth M]		IPR010659Reverse transcriptase connectionDomain
C [auth D],
H [auth M]		IPR008916Retrovirus capsid, C-terminalHomologous Superfamily
IPR036397Ribonuclease H superfamilyHomologous Superfamily
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR001995Peptidase A2A, retrovirus, catalyticDomain
IPR001878Zinc finger, CCHC-typeDomain
IPR008919Retrovirus capsid, N-terminalHomologous Superfamily
IPR012344Matrix protein, lentiviral and alpha-retroviral, N-terminalHomologous Superfamily
IPR036862Integrase, C-terminal domain superfamily, retroviralHomologous Superfamily
IPR018061RetropepsinsDomain
IPR010661Reverse transcriptase thumbDomain
IPR002156Ribonuclease H domainDomain
IPR036875Zinc finger, CCHC-type superfamilyHomologous Superfamily
IPR003308Integrase, N-terminal zinc-binding domainDomain
IPR001584Integrase, catalytic coreDomain
IPR045345Retroviral nucleocapsid Gag protein p24, C-terminal domainDomain
IPR010999Retroviral matrix proteinHomologous Superfamily
IPR021109Aspartic peptidase domain superfamilyHomologous Superfamily
IPR001969Aspartic peptidase, active siteActive Site
IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
IPR017856Integrase-like, N-terminalHomologous Superfamily
IPR000071Immunodeficiency lentiviral matrix, N-terminalDomain
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR001037Integrase, C-terminal, retroviralDomain
IPR034170Retropepsin-like catalytic domainDomain
IPR000477Reverse transcriptase domainDomain
IPR010659Reverse transcriptase connectionDomain
IPR008916Retrovirus capsid, C-terminalHomologous Superfamily