I [auth A6] PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. Domain H [auth A4] PF01779 Ribosomal L29e protein family (Ribosomal_L29e) Ribosomal L29e protein family - Family YB [auth SY] PF01090 Ribosomal protein S19e (Ribosomal_S19e) Ribosomal protein S19e - Family XB [auth SX] PF00203 Ribosomal protein S19 (Ribosomal_S19) Ribosomal protein S19 Domain VB [auth SV] PF16205 Ribosomal_S17 N-terminal (Ribosomal_S17_N) Ribosomal_S17 N-terminal - Family VB [auth SV] PF00366 Ribosomal protein S17 (Ribosomal_S17) Ribosomal protein S17 Domain UB [auth SU] PF00312 Ribosomal protein S15 (Ribosomal_S15) Ribosomal protein S15 Domain SB [auth SS] PF00416 Ribosomal protein S13/S18 (Ribosomal_S13) Ribosomal protein S13/S18 - Family RB [auth SR] PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. Domain G [auth A2] PF01778 Ribosomal L28e protein family (Ribosomal_L28e) Ribosomal L28e protein family - Family QB [auth SQ] PF00164 Ribosomal protein S12/S23 (Ribosom_S12_S23) Ribosomal protein S12/S23 This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain PB [auth SP] PF00411 Ribosomal protein S11 (Ribosomal_S11) Ribosomal protein S11 - Family OB [auth SO] PF03501 Plectin/S10 domain (S10_plectin) Plectin/S10 domain This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Domain MB [auth SM] PF00380 Ribosomal protein S9/S16 (Ribosomal_S9) Ribosomal protein S9/S16 - Family LB [auth SL] PF01201 Ribosomal protein S8e (Ribosomal_S8e) Ribosomal protein S8e - Family KB [auth SK] PF00410 Ribosomal protein S8 (Ribosomal_S8) Ribosomal protein S8 Domain JB [auth SJ] PF01251 Ribosomal protein S7e (Ribosomal_S7e) Ribosomal protein S7e - Family IB [auth SI] PF00177 Ribosomal protein S7p/S5e (Ribosomal_S7) Ribosomal protein S7p/S5e This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain HB [auth SH] PF01092 Ribosomal protein S6e (Ribosomal_S6e) Ribosomal protein S6e - Family F [auth A1] PF01777 Ribosomal L27e protein family (Ribosomal_L27e) Ribosomal L27e protein family - Family GB [auth SG] PF03719 Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) Ribosomal protein S5, C-terminal domain Domain GB [auth SG] PF00333 Ribosomal protein S5, N-terminal domain (Ribosomal_S5) Ribosomal protein S5, N-terminal domain Domain FB [auth SF] PF00900 Ribosomal family S4e (Ribosomal_S4e) Ribosomal family S4e - Family FB [auth SF] PF16121 40S ribosomal protein S4 C-terminus (40S_S4_C) 40S ribosomal protein S4 C-terminus - Family FB [auth SF] PF08071 RS4NT (NUC023) domain (RS4NT) RS4NT (NUC023) domain This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain FB [auth SF] PF00467 KOW motif (KOW) KOW motif - Family EB [auth SE] PF00163 Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) Ribosomal protein S4/S9 N-terminal domain - Family EB [auth SE] PF01479 S4 domain (S4) S4 domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. Domain DB [auth SD] PF07650 KH domain (KH_2) KH domain Domain DB [auth SD] PF00189 Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) Ribosomal protein S3, C-terminal domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain CB [auth SC] PF00318 Ribosomal protein S2 (Ribosomal_S2) Ribosomal protein S2 - Family YA [auth S5] PF01200 Ribosomal protein S28e (Ribosomal_S28e) Ribosomal protein S28e Domain XA [auth S4] PF01667 Ribosomal protein S27 (Ribosomal_S27e) Ribosomal protein S27 - Family E [auth AL] PF01294 Ribosomal protein L13e (Ribosomal_L13e) Ribosomal protein L13e - Family UA [auth S1] PF01282 Ribosomal protein S24e (Ribosomal_S24e) Ribosomal protein S24e - Family TA [auth A0] PF01246 Ribosomal protein L24e (Ribosomal_L24e) Ribosomal protein L24e Domain PA [auth AH] PF00347 Ribosomal protein L6 (Ribosomal_L6) Ribosomal protein L6 Domain PA [auth AH] PF01780 Ribosomal L37ae protein family (Ribosomal_L37ae) Ribosomal L37ae protein family - Family OA [auth AU] PF01775 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain NA [auth AG] PF05162 Ribosomal protein L41 (Ribosomal_L41) Ribosomal protein L41 - Family NA [auth AG] PF00673 ribosomal L5P family C-terminus (Ribosomal_L5_C) ribosomal L5P family C-terminus This region is found associated with Pfam:PF00281. Domain D [auth AB] PF01158 Ribosomal protein L36e (Ribosomal_L36e) Ribosomal protein L36e - Family MA [auth AF] PF01020 Ribosomal L40e family (Ribosomal_L40e) Ribosomal L40e family Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. Domain MA [auth AF] PF14374 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) 60S ribosomal protein L4 C-terminal domain This family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain MA [auth AF] PF00573 Ribosomal protein L4/L1 family (Ribosomal_L4) Ribosomal protein L4/L1 family - Family LA [auth AE] PF00832 Ribosomal L39 protein (Ribosomal_L39) Ribosomal L39 protein - Family KA [auth AD] PF03947 Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) Ribosomal Proteins L2, C-terminal domain Domain KA [auth AD] PF00181 Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) Ribosomal Proteins L2, RNA binding N-terminal domain Domain KA [auth AD] PF01781 Ribosomal L38e protein family (Ribosomal_L38e) Ribosomal L38e protein family - Family JA [auth A5] PF00327 Ribosomal protein L30p/L7e (Ribosomal_L30) Ribosomal protein L30p/L7e This family includes prokaryotic L30 and eukaryotic L7. Domain IA [auth A3] PF00831 Ribosomal L29 protein (Ribosomal_L29) Ribosomal L29 protein - Family HA [auth AZ] PF16906 Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) Ribosomal proteins L26 eukaryotic, L24P archaeal - Family HA [auth AZ] PF00467 KOW motif (KOW) KOW motif - Family GA [auth AT] PF01280 Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) Ribosomal protein L19e, N-terminal domain This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain FA [auth AY] PF00276 Ribosomal protein L23 (Ribosomal_L23) Ribosomal protein L23 - Family EA [auth AW] PF00237 Ribosomal protein L22p/L17e (Ribosomal_L22) Ribosomal protein L22p/L17e This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain DA [auth AR] PF17144 Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) Ribosomal large subunit proteins 60S L5, and 50S L18 - Family DA [auth AR] PF14204 Ribosomal L18 C-terminal region (Ribosomal_L18_c) Ribosomal L18 C-terminal region This domain is the C-terminal end of ribosomal L18/L5 proteins. Domain C [auth AC] PF01907 Ribosomal protein L37e (Ribosomal_L37e) Ribosomal protein L37e - Family CA [auth AQ] PF00252 Ribosomal protein L16p/L10e (Ribosomal_L16) Ribosomal protein L16p/L10e Domain BA [auth AO] PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain AA [auth AS] PF17135 Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) Ribosomal protein 60S L18 and 50S L18e - Family Z [auth AM] PF00238 Ribosomal protein L14p/L23e (Ribosomal_L14) Ribosomal protein L14p/L23e Domain Y [auth AK] PF00572 Ribosomal protein L13 (Ribosomal_L13) Ribosomal protein L13 - Family V [auth AI] PF00935 Ribosomal protein L44 (Ribosomal_L44) Ribosomal protein L44 - Family V [auth AI] PF01159 Ribosomal protein L6e (Ribosomal_L6e) Ribosomal protein L6e - Family S [auth AP] PF00827 Ribosomal L15 (Ribosomal_L15e) Ribosomal L15 - Family M [auth A9] PF01247 Ribosomal protein L35Ae (Ribosomal_L35Ae) Ribosomal protein L35Ae This entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain L [auth A8] PF01655 Ribosomal protein L32 (Ribosomal_L32e) Ribosomal protein L32 - Family K [auth AN] PF01929 Ribosomal protein L14 (Ribosomal_L14e) Ribosomal protein L14 - Family 
