9BSL | pdb_00009bsl

45SRbgA particle in complex with RbgA and YphC. Class A


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth J]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8089014 3000995 SCOP2B (2022-06-29)
G [auth H]SCOP2B Superfamily50S Ribosomal protein L14-like 8072020 3000433 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyRibosomal protein L13 8066055 3001134 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyRibosomal protein L4 8080694 3001146 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyTranslational proteins 8089142 3000811 SCOP2B (2022-06-29)
V [auth Y]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like 8065354 3001911 SCOP2B (2022-06-29)
U [auth W]SCOP2B SuperfamilyRas-like P-loop GTPases 8089823 3002022 SCOP2B (2022-06-29)
U [auth W]SCOP2B SuperfamilyEngA C-terminal domain-like 8089825 3000440 SCOP2B (2022-06-29)
U [auth W]SCOP2B SuperfamilyRas-like P-loop GTPases 8089822 3002022 SCOP2B (2022-06-29)
T [auth V]SCOP2B SuperfamilyRbgA C-terminal domain-like 8056747 3002359 SCOP2B (2022-06-29)
T [auth V]SCOP2B SuperfamilyRas-like P-loop GTPases 8019331 3002022 SCOP2B (2022-06-29)
R [auth T]SCOP2B SuperfamilyZn-binding ribosomal proteins 8081585 3001320 SCOP2B (2022-06-29)
Q [auth S]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8076285 3001378 SCOP2B (2022-06-29)
P [auth R]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8076730 3000713 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082505 3000334 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8077095 3000210 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyRibosomal protein L22 8076724 3001078 SCOP2B (2022-06-29)
L [auth M]SCOP2B Superfamilyl21p-like 8082437 3002005 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyRibosomal protein L20 8075004 3000563 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082419 3000334 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth J]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
H [auth I]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
G [auth H]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
F [auth G]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
E [auth F]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
D [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
C [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
V [auth Y]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
U [auth W]PF14714KH-domain-like of EngA bacterial GTPase enzymes, C-terminal (KH_dom-like)KH-domain-like of EngA bacterial GTPase enzymes, C-terminalThe KH-like domain at the C-terminus of the EngA subfamily of essential bacterial GTPases has a unique domain structure position. The two adjacent GTPase domains (GD1 and GD2), two domains of family MMR_HSR1, Pfam:PF01926, pack at either side of the ...The KH-like domain at the C-terminus of the EngA subfamily of essential bacterial GTPases has a unique domain structure position. The two adjacent GTPase domains (GD1 and GD2), two domains of family MMR_HSR1, Pfam:PF01926, pack at either side of the C-terminal domain. This C-terminal domain resembles a KH domain but is missing the distinctive RNA recognition elements. Conserved motifs of the nucleotide binding site of GD1 are integral parts of the GD1-KH domain interface, suggesting the interactions between these two domains are directly influenced by the GTP/GDP cycling of the protein. In contrast, the GD2-KH domain interface is distal to the GDP binding site of GD2. This family has not been added to the KH clan since SCOP classifies it separately due to its missing the key KH motif/fold.
Domain
U [auth W]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
T [auth V]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
B [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
B [auth C]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
S [auth U]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
R [auth T]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
Q [auth S]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
P [auth R]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
O [auth P]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
O [auth P]PF00467KOW motif (KOW)KOW motif- Family
N [auth O]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
M [auth N]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
K [auth L]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
J [auth K]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth J]Large ribosomal subunit protein bL17
H [auth I]Large ribosomal subunit protein uL15
G [auth H]Large ribosomal subunit protein uL14
F [auth G]Large ribosomal subunit protein uL13
E [auth F]Large ribosomal subunit protein uL6
D [auth E]Large ribosomal subunit protein uL4
C [auth D]Large ribosomal subunit protein uL3
V [auth Y]Large ribosomal subunit protein uL1
U [auth W]GTPase Der -
T [auth V]Ribosome biogenesis GTPase A
B [auth C]Large ribosomal subunit protein uL2
S [auth U]Large ribosomal subunit protein bL34
R [auth T]Large ribosomal subunit protein bL32
Q [auth S]Large ribosomal subunit protein uL30
P [auth R]Large ribosomal subunit protein uL29
O [auth P]Large ribosomal subunit protein uL24
N [auth O]Large ribosomal subunit protein uL23
M [auth N]Large ribosomal subunit protein uL22
L [auth M]Large ribosomal subunit protein bL21
K [auth L]Large ribosomal subunit protein bL20
J [auth K]Large ribosomal subunit protein bL19
23S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth J]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
I [auth J]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
I [auth J]IPR000456Large ribosomal subunit protein bL17Family
H [auth I]IPR021131Large ribosomal subunit protein uL15/eL18Domain
H [auth I]IPR030878Large ribosomal subunit protein uL15Family
H [auth I]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
H [auth I]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
H [auth I]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
G [auth H]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
G [auth H]IPR000218Large ribosomal subunit protein uL14Family
G [auth H]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
G [auth H]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
F [auth G]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
F [auth G]IPR005822Large ribosomal subunit protein uL13Family
F [auth G]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
F [auth G]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
E [auth F]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
E [auth F]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
E [auth F]IPR000702Large ribosomal subunit protein uL6-likeFamily
E [auth F]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
E [auth F]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
D [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
D [auth E]IPR002136Large ribosomal subunit protein uL4Family
D [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
C [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
C [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
C [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
C [auth D]IPR000597Large ribosomal subunit protein uL3Family
V [auth Y]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
V [auth Y]IPR005878Large ribosomal subunit protein uL1, bacteriaFamily
V [auth Y]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
V [auth Y]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
V [auth Y]IPR002143Large ribosomal subunit protein uL1Family
V [auth Y]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
U [auth W]IPR005225Small GTP-binding domainDomain
U [auth W]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
U [auth W]IPR016484GTPase DerFamily
U [auth W]IPR032859GTPase Der, C-terminal KH-domain-likeDomain
U [auth W]IPR031166EngA-type guanine nucleotide-binding (G) domainDomain
U [auth W]IPR006073GTP binding domainDomain
U [auth W]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
T [auth V]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
T [auth V]IPR019991GTP-binding protein, ribosome biogenesisFamily
T [auth V]IPR016478GTPase, MTG1Family
T [auth V]IPR006073GTP binding domainDomain
T [auth V]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
T [auth V]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth C]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
B [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
B [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
B [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
B [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
B [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
B [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
B [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
B [auth C]IPR002171Large ribosomal subunit protein uL2Family
S [auth U]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
S [auth U]IPR000271Large ribosomal subunit protein bL34Family
R [auth T]IPR002677Large ribosomal subunit protein bL32Family
R [auth T]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
R [auth T]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
Q [auth S]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Q [auth S]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
Q [auth S]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Q [auth S]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
P [auth R]IPR050063Universal ribosomal protein uL29Family
P [auth R]IPR001854Large ribosomal subunit protein uL29Family
P [auth R]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
P [auth R]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
O [auth P]IPR003256Large ribosomal subunit protein uL24Family
O [auth P]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
O [auth P]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
O [auth P]IPR005824KOWDomain
O [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
O [auth P]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
N [auth O]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
N [auth O]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
N [auth O]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
N [auth O]IPR013025Large ribosomal subunit protein uL23-likeFamily
M [auth N]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
M [auth N]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
M [auth N]IPR001063Large ribosomal subunit protein uL22Family
M [auth N]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
M [auth N]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
L [auth M]IPR028909Large ribosomal subunit protein bL21-likeFamily
L [auth M]IPR001787Large ribosomal subunit protein bL21Family
L [auth M]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
L [auth M]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
K [auth L]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
K [auth L]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
K [auth L]IPR005813Large ribosomal subunit protein bL20Family
J [auth K]IPR001857Large ribosomal subunit protein bL19Family
J [auth K]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
J [auth K]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
J [auth K]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily