9BPB | pdb_00009bpb

Tethered respiratory III2IV2 supercomplex from Saccharomyces cerevisiae


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040294 3001831 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040292 3001831 SCOP2B (2022-06-29)
V [auth K]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040292 3001831 SCOP2B (2022-06-29)
V [auth K]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040294 3001831 SCOP2B (2022-06-29)
X [auth M]SCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040299 3000966 SCOP2B (2022-06-29)
X [auth M]SCOP2B SuperfamilyTransmembrane di-heme cytochromes 8040302 3000517 SCOP2B (2022-06-29)
CSCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040299 3000966 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTransmembrane di-heme cytochromes 8040302 3000517 SCOP2B (2022-06-29)
Y [auth N]SCOP2B SuperfamilyCytochrome c 8040304 3000815 SCOP2B (2022-06-29)
Y [auth N]SCOP2B SuperfamilyCytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 8040305 3000762 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 8040305 3000762 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c 8040304 3000815 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyISP domain 8040307 3000233 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyISP transmembrane anchor 8040308 3000753 SCOP2B (2022-06-29)
Z [auth O]SCOP2B SuperfamilyISP domain 8040307 3000233 SCOP2B (2022-06-29)
Z [auth O]SCOP2B SuperfamilyISP transmembrane anchor 8040308 3000753 SCOP2B (2022-06-29)
DA [auth S]SCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040319 3000779 SCOP2B (2022-06-29)
ISCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040319 3000779 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040318 3000770 SCOP2B (2022-06-29)
CA [auth R]SCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040318 3000770 SCOP2B (2022-06-29)
BA [auth Q]SCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040315 3000797 SCOP2B (2022-06-29)
GSCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040315 3000797 SCOP2B (2022-06-29)
AA [auth P]SCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040312 3000806 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040312 3000806 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040297 3001831 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040300 3001831 SCOP2B (2022-06-29)
W [auth L]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040300 3001831 SCOP2B (2022-06-29)
W [auth L]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040297 3001831 SCOP2B (2022-06-29)
NA [auth v]SCOP2B SuperfamilyCytochrome c oxidase subunit h 8095569 3000395 SCOP2B (2022-06-29)
S [auth j]SCOP2B SuperfamilyCytochrome c oxidase subunit h 8095569 3000395 SCOP2B (2022-06-29)
KA [auth r]SCOP2B SuperfamilyCytochrome c oxidase subunit E 8095803 3001402 SCOP2B (2022-06-29)
P [auth f]SCOP2B SuperfamilyCytochrome c oxidase subunit E 8095803 3001402 SCOP2B (2022-06-29)
HA [auth o]SCOP2B SuperfamilyCytochrome c oxidase subunit III-like 8095567 3000671 SCOP2B (2022-06-29)
M [auth c]SCOP2B SuperfamilyCytochrome c oxidase subunit III-like 8095567 3000671 SCOP2B (2022-06-29)
FA [auth m]SCOP2B SuperfamilyCytochrome c oxidase subunit I-like 8095115 3000653 SCOP2B (2022-06-29)
K [auth a]SCOP2B SuperfamilyCytochrome c oxidase subunit I-like 8095115 3000653 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
V [auth K]
PF05193Peptidase M16 inactive domain (Peptidase_M16_C)Peptidase M16 inactive domainPeptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. Domain
A,
V [auth K]
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
A,
V [auth K]
PF00115Cytochrome C and Quinol oxidase polypeptide I (COX1)Cytochrome C and Quinol oxidase polypeptide I- Family
C,
X [auth M]
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petDDomain
C,
X [auth M]
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petBDomain
C,
X [auth M]
PF00510Cytochrome c oxidase subunit III (COX3)Cytochrome c oxidase subunit IIIDomain
C,
X [auth M]
PF00115Cytochrome C and Quinol oxidase polypeptide I (COX1)Cytochrome C and Quinol oxidase polypeptide I- Family
D,
Y [auth N]
PF00116Cytochrome C oxidase subunit II, periplasmic domain (COX2)Cytochrome C oxidase subunit II, periplasmic domainDomain
D,
Y [auth N]
PF02790Cytochrome C oxidase subunit II, transmembrane domain (COX2_TM)Cytochrome C oxidase subunit II, transmembrane domain- Family
D,
Y [auth N]
PF02167Cytochrome C1 family (Cytochrom_C1)Cytochrome C1 family- Family
E,
Z [auth O]
PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
E,
Z [auth O]
PF00510Cytochrome c oxidase subunit III (COX3)Cytochrome c oxidase subunit IIIDomain
DA [auth S],
I
PF02238Cytochrome c oxidase subunit VII (COX7a)Cytochrome c oxidase subunit VII- Family
CA [auth R],
H
PF02939UcrQ family (UcrQ)UcrQ family- Family
BA [auth Q],
G
PF02271Ubiquinol-cytochrome C reductase complex 14kD subunit (UCR_14kD)Ubiquinol-cytochrome C reductase complex 14kD subunit- Family
BA [auth Q],
G
PF02238Cytochrome c oxidase subunit VII (COX7a)Cytochrome c oxidase subunit VII- Family
AA [auth P],
F
PF02320Ubiquinol-cytochrome C reductase hinge protein (UCR_hinge)Ubiquinol-cytochrome C reductase hinge proteinThe ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c ...The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex.
Domain
B,
W [auth L]
PF00116Cytochrome C oxidase subunit II, periplasmic domain (COX2)Cytochrome C oxidase subunit II, periplasmic domainDomain
B,
W [auth L]
PF02790Cytochrome C oxidase subunit II, transmembrane domain (COX2_TM)Cytochrome C oxidase subunit II, transmembrane domain- Family
B,
W [auth L]
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
EA [auth T],
J
PF09796Ubiquinol-cytochrome-c reductase complex subunit (QCR10) (QCR10)Ubiquinol-cytochrome-c reductase complex subunit (QCR10)- Family
EA [auth T],
J
PF02297Cytochrome oxidase c subunit VIb (COX6B)Cytochrome oxidase c subunit VIbCytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of the potentially heme-binding subunit IVb of the oxidase. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
V [auth K]
Cytochrome b-c1 complex subunit 1, mitochondrial
C,
X [auth M]
Cytochrome b
D,
Y [auth N]
Cytochrome c1, heme protein, mitochondrial
E,
Z [auth O]
Cytochrome b-c1 complex subunit Rieske, mitochondrial
OA [auth w],
T [auth k]
Cytochrome c oxidase subunit 13, mitochondrial
DA [auth S],
I
Cytochrome b-c1 complex subunit 9, mitochondrial-
CA [auth R],
H
Cytochrome b-c1 complex subunit 8, mitochondrial
BA [auth Q],
G
Cytochrome b-c1 complex subunit 7, mitochondrial,Cytochrome c oxidase subunit 8, mitochondrial
AA [auth P],
F
Cytochrome b-c1 complex subunit 6, mitochondrial-
PA [auth x],
U [auth l]
Cytochrome c oxidase subunit 26, mitochondrial- -
B,
W [auth L]
Cytochrome b-c1 complex subunit 2, mitochondrial
NA [auth v],
S [auth j]
Cytochrome c oxidase subunit 12, mitochondrial
MA [auth u],
R [auth i]
Cytochrome c oxidase subunit 9, mitochondrial
LA [auth s],
Q [auth g]
Cytochrome c oxidase subunit 7, mitochondrial
KA [auth r],
P [auth f]
Cytochrome c oxidase subunit 6, mitochondrial
JA [auth q],
O [auth e]
Cytochrome c oxidase subunit 5A, mitochondrial
IA [auth p],
N [auth d]
Cytochrome c oxidase subunit 4, mitochondrial
HA [auth o],
M [auth c]
Cytochrome c oxidase subunit 3
GA [auth n],
L [auth b]
Cytochrome c oxidase subunit 2
FA [auth m],
K [auth a]
Cytochrome c oxidase subunit 1
EA [auth T],
J
Cytochrome b-c1 complex subunit 10, mitochondrial-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
V [auth K]
IPR007863Peptidase M16, C-terminalDomain
A,
V [auth K]
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
A,
V [auth K]
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
A,
V [auth K]
IPR011765Peptidase M16, N-terminalDomain
C,
X [auth M]
IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
C,
X [auth M]
IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
C,
X [auth M]
IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
C,
X [auth M]
IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
C,
X [auth M]
IPR005798Cytochrome b/b6, C-terminalDomain
C,
X [auth M]
IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
C,
X [auth M]
IPR030689Cytochrome bFamily
C,
X [auth M]
IPR005797Cytochrome b/b6, N-terminal domainDomain
D,
Y [auth N]
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
D,
Y [auth N]
IPR002326Cytochrome c1Family
D,
Y [auth N]
IPR009056Cytochrome c-like domainDomain
D,
Y [auth N]
IPR021157Cytochrome c1, transmembrane anchor, C-terminalHomologous Superfamily
E,
Z [auth O]
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
E,
Z [auth O]
IPR014349Rieske iron-sulphur proteinFamily
E,
Z [auth O]
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
E,
Z [auth O]
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
E,
Z [auth O]
IPR005805Rieske iron-sulphur protein, C-terminalDomain
E,
Z [auth O]
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
E,
Z [auth O]
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
OA [auth w],
T [auth k]
IPR018507Cytochrome c oxidase, subunit VIa, conserved siteConserved Site
OA [auth w],
T [auth k]
IPR036418Cytochrome c oxidase, subunit VIa superfamilyHomologous Superfamily
OA [auth w],
T [auth k]
IPR001349Cytochrome c oxidase, subunit VIaFamily
DA [auth S],
I
IPR008027Cytochrome b-c1 complex subunit 9Family
DA [auth S],
I
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyHomologous Superfamily
CA [auth R],
H
IPR004205Cytochrome b-c1 complex subunit 8Family
CA [auth R],
H
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyHomologous Superfamily
BA [auth Q],
G
IPR003197Cytochrome b-c1 complex subunit 7Family
BA [auth Q],
G
IPR036544Cytochrome b-c1 complex subunit 7 superfamilyHomologous Superfamily
BA [auth Q],
G
IPR036636Cytochrome c oxidase subunit VIIc superfamilyHomologous Superfamily
BA [auth Q],
G
IPR004202Cytochrome c oxidase subunit VIIcFamily
AA [auth P],
F
IPR023184Ubiquinol-cytochrome C reductase hinge domainDomain
AA [auth P],
F
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyHomologous Superfamily
B,
W [auth L]
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
B,
W [auth L]
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
B,
W [auth L]
IPR011765Peptidase M16, N-terminalDomain
B,
W [auth L]
IPR001431Peptidase M16, zinc-binding siteBinding Site
NA [auth v],
S [auth j]
IPR003213Cytochrome c oxidase, subunit VIbFamily
NA [auth v],
S [auth j]
IPR036549Cytochrome c oxidase subunit 6B/Cytochrome c oxidase assembly factor 6-like superfamilyHomologous Superfamily
NA [auth v],
S [auth j]
IPR048280Cytochrome oxidase c subunit VIb-likeFamily
MA [auth u],
R [auth i]
IPR014368Cytochrome c oxidase, subunit VIIa, fungalFamily
LA [auth s],
Q [auth g]
IPR014367Cytochrome c oxidase subunit VII, budding yeastFamily
LA [auth s],
Q [auth g]
IPR039297Cytochrome c oxidase subunit VIIFamily
KA [auth r],
P [auth f]
IPR003204Cytochrome c oxidase, subunit Va/VIFamily
KA [auth r],
P [auth f]
IPR036545Cytochrome c oxidase, subunit Va/VI superfamilyHomologous Superfamily
JA [auth q],
O [auth e]
IPR004203Cytochrome c oxidase subunit IV familyFamily
JA [auth q],
O [auth e]
IPR036639Cytochrome c oxidase subunit IV superfamilyHomologous Superfamily
IA [auth p],
N [auth d]
IPR002124Cytochrome c oxidase, subunit VbFamily
IA [auth p],
N [auth d]
IPR036972Cytochrome c oxidase, subunit Vb superfamilyHomologous Superfamily
HA [auth o],
M [auth c]
IPR035973Cytochrome c oxidase subunit III-like superfamilyHomologous Superfamily
HA [auth o],
M [auth c]
IPR000298Cytochrome c oxidase subunit III-likeDomain
HA [auth o],
M [auth c]
IPR033945Cytochrome c oxidase subunit III domainDomain
HA [auth o],
M [auth c]
IPR013833Cytochrome c oxidase, subunit III, 4-helical bundleHomologous Superfamily
HA [auth o],
M [auth c]
IPR024791Cytochrome c oxidase subunit IIIFamily
GA [auth n],
L [auth b]
IPR011759Cytochrome C oxidase subunit II, transmembrane domainDomain
GA [auth n],
L [auth b]
IPR036257Cytochrome C oxidase subunit II, transmembrane domain superfamilyHomologous Superfamily
GA [auth n],
L [auth b]
IPR034210Cytochrome c oxidase subunit 2, C-terminalDomain
GA [auth n],
L [auth b]
IPR045187Cytochrome c/quinol oxidase subunit IIFamily
GA [auth n],
L [auth b]
IPR002429Cytochrome c oxidase subunit II-like C-terminalDomain
GA [auth n],
L [auth b]
IPR008972CupredoxinHomologous Superfamily
GA [auth n],
L [auth b]
IPR001505Copper centre Cu(A)Binding Site
GA [auth n],
L [auth b]
IPR014222Cytochrome c oxidase, subunit IIDomain
FA [auth m],
K [auth a]
IPR036927Cytochrome c oxidase-like, subunit I superfamilyHomologous Superfamily
FA [auth m],
K [auth a]
IPR000883Cytochrome c oxidase subunit IFamily
FA [auth m],
K [auth a]
IPR023615Cytochrome c oxidase, subunit I, copper-binding siteBinding Site
FA [auth m],
K [auth a]
IPR023616Cytochrome c oxidase-like, subunit I domainDomain
FA [auth m],
K [auth a]
IPR033944Cytochrome c oxidase subunit I domainDomain
EA [auth T],
J
IPR019182Cytochrome b-c1 complex subunit 10, fungiFamily