9B8J | pdb_00009b8j

GP38-GnH-DS-Gc in the pre-fusion conformation


SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
G [auth L]Light ChainIGKV1 Kappaglycoprotein cSAbDab (2025-12-19)
F [auth H]Heavy ChainIGHV3 -glycoprotein cSAbDab (2025-12-19)
E [auth F]Light ChainIGKV1 Kappagp38SAbDab (2025-12-19)
D [auth E]Heavy ChainIGHV3 -gp38SAbDab (2025-12-19)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth D]PF20682Hantavirus glycoprotein Gc, C-terminal (Hanta_Gc_C)Hantavirus glycoprotein Gc, C-terminalThe medium (M) genome segment of hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins [1,2] Gn and Gc (also known as G1 and G2, respectively) as a polyprotein precursor. Gn and Gc forms homotetramers at the surface of the virion, w ...The medium (M) genome segment of hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins [1,2] Gn and Gc (also known as G1 and G2, respectively) as a polyprotein precursor. Gn and Gc forms homotetramers at the surface of the virion, which attach the virion to host cell receptors including integrin beta3/ITGB3 and induce internalisation, predominantly through clathrin-dependent endocytosis [3,4]. This protein has a typical class II fusion protein fold consisting of a central beta-sandwich domain (termed domain I) made of eight beta-strands arranged in two antiparallel beta-sheets; domain II which has an elongated shape with two subdomains (a central, opened beta-barrel proximal to domain I and a distal beta-sandwich 'tip') and the C-terminal domain III, represented in this entry, which has a Ig-like fold [1,2].
Domain
PF07948Nairovirus GP38 (Nairovirus_GP38)Nairovirus GP38This entry represents the GP38 secreted glycoprotein from nairoviruses, including CCHFV and Dugbe virus. It is encoded in the glycoprotein precursor complex (GPC) from the M segment of nairovirus genome. It has a novel fold composed of a 3-helix bun ...This entry represents the GP38 secreted glycoprotein from nairoviruses, including CCHFV and Dugbe virus. It is encoded in the glycoprotein precursor complex (GPC) from the M segment of nairovirus genome. It has a novel fold composed of a 3-helix bundle and a beta-sandwich [1,2]. Although its function is unknown, it is immunogenic in humans and, therefore, an interesting vaccine target [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth L]ADI-36125 light chain---
F [auth H]ADI-36125 heavy chain---
E [auth F]ADI-46152 light chain---
D [auth E]ADI-46152 heavy chain---
C [auth D]Glycoprotein C-
Glycoprotein N-
GP38-