9B45 | pdb_00009b45

Pseudomonas phage Pa193 baseplate complex and tail fiber

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
TA [auth G], UA [auth H], VA [auth I], WA [auth J], XA [auth K], TA [auth G], UA [auth H], VA [auth I], WA [auth J], XA [auth K], YA [auth L]	PF18352	Phage protein Gp138 N-terminal domain (Gp138_N)	Phage protein Gp138 N-terminal domain	This domain is found in the N-terminal domain of gene product 138 (gp138) in an unidentified bacteriophage. Gp138 is thought to be involved in the process of opening the host cell membrane during infection. The domain has an OB-fold with an intramole ...	This domain is found in the N-terminal domain of gene product 138 (gp138) in an unidentified bacteriophage. Gp138 is thought to be involved in the process of opening the host cell membrane during infection. The domain has an OB-fold with an intramolecular disulfide bond between C114 and C120 [1].	Domain
TA [auth G], UA [auth H], VA [auth I], WA [auth J], XA [auth K], TA [auth G], UA [auth H], VA [auth I], WA [auth J], XA [auth K], YA [auth L]	PF04865	Baseplate J-like protein barrel domain (Baseplate_J)	Baseplate J-like protein barrel domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in va ...	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in various baseplate J-like proteins.	Domain
NA [auth M], OA [auth N], PA [auth O], QA [auth P], RA [auth Q], NA [auth M], OA [auth N], PA [auth O], QA [auth P], RA [auth Q], SA [auth R]	PF22764	Tail fiber protein gp32 (E217_Gp32)	Tail fiber protein gp32	-	Family
NA [auth M], OA [auth N], PA [auth O], QA [auth P], RA [auth Q], NA [auth M], OA [auth N], PA [auth O], QA [auth P], RA [auth Q], SA [auth R]	PF04865	Baseplate J-like protein barrel domain (Baseplate_J)	Baseplate J-like protein barrel domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in va ...	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in various baseplate J-like proteins.	Domain
BA [auth v], CA [auth w], DA [auth x], EA [auth y], FA [auth z], BA [auth v], CA [auth w], DA [auth x], EA [auth y], FA [auth z], GA [auth 1]	PF11041	Bacteriophage baseplate wedge 1 protein (Phage_Wedge1)	Bacteriophage baseplate wedge 1 protein	-	Family
AA [auth X], Y [auth V], Z [auth W]	PF22760	Baseplate component gp38 (Gp38_E217)	Baseplate component gp38	-	Family
AA [auth X], Y [auth V], Z [auth W]	PF11041	Bacteriophage baseplate wedge 1 protein (Phage_Wedge1)	Bacteriophage baseplate wedge 1 protein	-	Family
P [auth S], Q [auth T], R [auth U]	PF04865	Baseplate J-like protein barrel domain (Baseplate_J)	Baseplate J-like protein barrel domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in va ...	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in various baseplate J-like proteins.	Domain
J [auth A], K [auth B], L [auth C], M [auth D], N [auth E], J [auth A], K [auth B], L [auth C], M [auth D], N [auth E], O [auth F]	PF22759	Baseplate hub gp41 (E217_GP41)	Baseplate hub gp41	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth j], B [auth k], C [auth l], D [auth m], E [auth n], A [auth j], B [auth k], C [auth l], D [auth m], E [auth n], F [auth o], HA [auth q], IA [auth p], JA [auth r], KA [auth s], LA [auth t], MA [auth u]	gp45-a Baseplate wedge 1	-	-	-
V [auth d], W [auth e], X [auth f]	gp42 Tail hub	-	-	-
TA [auth G], UA [auth H], VA [auth I], WA [auth J], XA [auth K], TA [auth G], UA [auth H], VA [auth I], WA [auth J], XA [auth K], YA [auth L]	gp35 Sheath initiator	-	-	-
NA [auth M], OA [auth N], PA [auth O], QA [auth P], RA [auth Q], NA [auth M], OA [auth N], PA [auth O], QA [auth P], RA [auth Q], SA [auth R]	gp37 Baseplate tube	-	-	-
BA [auth v], CA [auth w], DA [auth x], EA [auth y], FA [auth z], BA [auth v], CA [auth w], DA [auth x], EA [auth y], FA [auth z], GA [auth 1]	gp46 Baseplate wedge 2	-	-	-
AA [auth X], Y [auth V], Z [auth W]	gp39 Ripcord-2	-	-	-
S [auth a], T [auth b], U [auth c]	gp41 Tape measure protein	peptidoglycan lytic transglycosylase activity peptidoglycan muralytic activity lyase activity catalytic activity carbon-oxygen lyase activity, acting on polysaccharides carbon-oxygen lyase activity	glycosaminoglycan metabolic process aminoglycan metabolic process peptidoglycan metabolic process carbohydrate derivative metabolic process metabolic process cellular process macromolecule metabolic process	cellular anatomical structure membrane
P [auth S], Q [auth T], R [auth U]	gp38 Ripcord-1	-	-	-
J [auth A], K [auth B], L [auth C], M [auth D], N [auth E], J [auth A], K [auth B], L [auth C], M [auth D], N [auth E], O [auth F]	gp34 helical bundle	-	-	-
G [auth 2], H [auth 3], I [auth 4]	gp47 Tail fiber	-	-	-
AB [auth h], BB [auth i], ZA [auth g]	gp44 Tail tip	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth j], B [auth k], C [auth l], D [auth m], E [auth n], A [auth j], B [auth k], C [auth l], D [auth m], E [auth n], F [auth o], HA [auth q], IA [auth p], JA [auth r], KA [auth s], LA [auth t], MA [auth u]	IPR006949	Baseplate protein J-like, barrel domain	Domain
V [auth d], W [auth e], X [auth f]	IPR054496	Baseplate hub gp41	Family
NA [auth M], OA [auth N], PA [auth O], QA [auth P], RA [auth Q], NA [auth M], OA [auth N], PA [auth O], QA [auth P], RA [auth Q], SA [auth R]	IPR054440	Tail fiber protein gp32-like	Family
BA [auth v], CA [auth w], DA [auth x], EA [auth y], FA [auth z], BA [auth v], CA [auth w], DA [auth x], EA [auth y], FA [auth z], GA [auth 1]	IPR021283	Bacteriophage baseplate wedge 1 protein	Family
AA [auth X], Y [auth V], Z [auth W]	IPR054442	E217 Baseplate component gp38-like	Family
S [auth a], T [auth b], U [auth c]	IPR000189	Prokaryotic transglycosylase, active site	Active Site
S [auth a], T [auth b], U [auth c]	IPR023346	Lysozyme-like domain superfamily	Homologous Superfamily
S [auth a], T [auth b], U [auth c]	IPR008258	Transglycosylase SLT domain 1	Domain
J [auth A], K [auth B], L [auth C], M [auth D], N [auth E], J [auth A], K [auth B], L [auth C], M [auth D], N [auth E], O [auth F]	IPR054252	Cyanophage baseplate Pam3 plug gp18	Domain
AB [auth h], BB [auth i], ZA [auth g]	IPR037026	Vgr protein, OB-fold domain superfamily	Homologous Superfamily
AB [auth h], BB [auth i], ZA [auth g]	IPR041599	Phage protein Gp138 N-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.