9B0B | pdb_00009b0b

Structure of Optineurin bound to HOIP NZF1 domain

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth E]	SCOP2B Superfamily	Ran binding protein zinc finger-like	8081677	3000133	SCOP2B (2022-06-29)
C [auth G]	SCOP2B Superfamily	Ran binding protein zinc finger-like	8081677	3000133	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	NEMO CC2-LZ-like	8090865	3002465	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	NEMO CC2-LZ-like	8090865	3002465	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	NEMO CC2-LZ-like	8090865	3002465	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	NEMO CC2-LZ-like	8090865	3002465	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, D [auth C], E [auth D]	PF16516	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator (CC2-LZ)	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator	-	Coiled-coil

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth G], F [auth E]	E3 ubiquitin-protein ligase RNF31	polyubiquitin modification-dependent protein binding protein binding binding K48-linked polyubiquitin modification-dependent protein binding modification-dependent protein binding ubiquitin binding ubiquitin-like protein binding linear polyubiquitin binding K63-linked polyubiquitin modification-dependent protein binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity polyubiquitin modification-dependent protein binding protein binding binding K48-linked polyubiquitin modification-dependent protein binding modification-dependent protein binding ubiquitin binding ubiquitin-like protein binding linear polyubiquitin binding K63-linked polyubiquitin modification-dependent protein binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding identical protein binding	protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein linear polyubiquitination protein modification by small protein conjugation or removal cellular response to stimulus protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein linear polyubiquitination protein modification by small protein conjugation or removal cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling immune response-regulating cell surface receptor signaling pathway immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process positive regulation of immune system process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway immune response T cell receptor signaling pathway immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response defense response to bacterium biological process involved in interspecies interaction between organisms response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus regulation of localization establishment of protein localization regulation of protein localization protein targeting regulation of protein targeting to mitochondrion regulation of establishment of protein localization positive regulation of establishment of protein localization establishment of localization regulation of establishment of protein localization to mitochondrion localization establishment of protein localization to organelle regulation of protein targeting macromolecule localization protein targeting to mitochondrion positive regulation of protein targeting to mitochondrion intracellular protein localization establishment of protein localization to mitochondrion positive regulation of establishment of protein localization to mitochondrion regulation of defense response regulation of response to biotic stimulus catabolic process regulation of response to external stimulus macroautophagy positive regulation of xenophagy autophagy xenophagy regulation of autophagy positive regulation of metabolic process positive regulation of response to external stimulus regulation of response to stress positive regulation of macroautophagy process utilizing autophagic mechanism positive regulation of autophagy regulation of xenophagy regulation of catabolic process positive regulation of catabolic process regulation of macroautophagy defense response to other organism positive regulation of defense response regulation of metabolic process CD40 signaling pathway necroptotic process negative regulation of programmed cell death negative regulation of necroptotic process negative regulation of biological process programmed necrotic cell death regulation of programmed cell death cell death regulation of necroptotic process negative regulation of programmed necrotic cell death negative regulation of cellular process regulation of programmed necrotic cell death programmed cell death positive regulation of DNA-binding transcription factor activity positive regulation of NF-kappaB transcription factor activity RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process positive regulation of molecular function nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of molecular function regulation of gene expression biosynthetic process regulation of DNA-binding transcription factor activity regulation of macromolecule biosynthetic process regulation of DNA-templated transcription	cell periphery protein-containing complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane plasma membrane signaling receptor complex membrane protein complex CD40 receptor complex receptor complex intracellular anatomical structure cytoplasm cytosol LUBAC complex cell periphery protein-containing complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane plasma membrane signaling receptor complex membrane protein complex CD40 receptor complex receptor complex intracellular anatomical structure cytoplasm cytosol LUBAC complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane
A, B, D [auth C], E [auth D]	Optineurin	polyubiquitin modification-dependent protein binding protein binding binding modification-dependent protein binding K63-linked polyubiquitin modification-dependent protein binding protein-macromolecule adaptor activity molecular adaptor activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding identical protein binding	Golgi to plasma membrane transport establishment of protein localization cellular localization protein localization to cell periphery nitrogen compound transport post-Golgi vesicle-mediated transport transport establishment of protein localization to membrane protein localization to plasma membrane establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport localization within membrane protein localization to membrane establishment of localization vesicle-mediated transport Golgi to plasma membrane transport establishment of protein localization cellular localization protein localization to cell periphery nitrogen compound transport post-Golgi vesicle-mediated transport transport establishment of protein localization to membrane protein localization to plasma membrane establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport localization within membrane protein localization to membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization protein transport macromolecule localization cellular process intracellular protein localization Golgi vesicle transport cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process negative regulation of canonical NF-kappaB signal transduction regulation of signal transduction intracellular signal transduction negative regulation of cell communication cell communication regulation of intracellular signal transduction intracellular signaling cassette negative regulation of cellular process signal transduction regulation of biological process regulation of signaling negative regulation of response to stimulus biological regulation negative regulation of signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction biological process involved in interspecies interaction between organisms immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus regulation of defense response regulation of response to biotic stimulus catabolic process regulation of response to external stimulus macroautophagy positive regulation of xenophagy autophagy positive regulation of biological process xenophagy regulation of autophagy positive regulation of response to stimulus positive regulation of metabolic process positive regulation of response to external stimulus regulation of response to stress positive regulation of macroautophagy process utilizing autophagic mechanism positive regulation of cellular process positive regulation of autophagy regulation of xenophagy regulation of catabolic process positive regulation of catabolic process regulation of macroautophagy positive regulation of defense response metabolic process regulation of metabolic process mitophagy type 2 mitophagy autophagy of mitochondrion cell death protein localization to Golgi apparatus protein localization to organelle regulation of receptor recycling negative regulation of receptor recycling negative regulation of metabolic process regulation of macromolecule metabolic process receptor recycling receptor metabolic process macromolecule metabolic process negative regulation of macromolecule metabolic process defense response to Gram-negative bacterium defense response to bacterium response to bacterium cellular component organization organelle organization Golgi ribbon formation cellular component organization or biogenesis Golgi organization endomembrane system organization cellular response to topologically incorrect protein cellular response to stress response to topologically incorrect protein cellular response to unfolded protein response to unfolded protein	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen vacuole autophagosome endosome membrane membrane endosome intracellular vesicle recycling endosome endomembrane system cytoplasmic vesicle membrane bounding membrane of organelle recycling endosome membrane vesicle membrane cytoplasmic vesicle vesicle organelle membrane Golgi apparatus subcompartment Golgi apparatus organelle subcompartment trans-Golgi network Golgi membrane perinuclear region of cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth G], F [auth E]	IPR002867	IBR domain	Domain
C [auth G], F [auth E]	IPR044066	TRIAD supradomain	Domain
C [auth G], F [auth E]	IPR036339	PUB-like domain superfamily	Homologous Superfamily
C [auth G], F [auth E]	IPR026254	E3 ubiquitin-protein ligase RNF31-like	Family
C [auth G], F [auth E]	IPR047541	E3 ubiquitin-protein ligase RNF31-like, modified RING finger, HC subclass	Domain
C [auth G], F [auth E]	IPR032065	E3 ubiquitin-protein ligase RNF31, UBA-like domain	Domain
C [auth G], F [auth E]	IPR047539	E3 ubiquitin-protein ligase RNF31, UBA domain	Domain
C [auth G], F [auth E]	IPR015940	Ubiquitin-associated domain	Domain
C [auth G], F [auth E]	IPR036443	Zinc finger, RanBP2-type superfamily	Homologous Superfamily
C [auth G], F [auth E]	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
C [auth G], F [auth E]	IPR018997	PUB domain	Domain
C [auth G], F [auth E]	IPR047542	E3 ubiquitin-protein ligase RNF31-like, Rcat domain	Domain
C [auth G], F [auth E]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
C [auth G], F [auth E]	IPR047543	E3 ubiquitin-protein ligase RNF31-like, Bbox1 zinc finger	Domain
C [auth G], F [auth E]	IPR040641	E3 ubiquitin-protein ligase RNF31, PUB domain	Domain
C [auth G], F [auth E]	IPR047540	E3 ubiquitin-protein ligase RNF31-like, BRcat domain	Domain
C [auth G], F [auth E]	IPR001876	Zinc finger, RanBP2-type	Domain
C [auth G], F [auth E]	IPR041031	RNF31, C-terminal	Domain
A, B, D [auth C], E [auth D]	IPR034735	NEMO, Zinc finger	Domain
A, B, D [auth C], E [auth D]	IPR021063	NF-kappa-B essential modulator NEMO, N-terminal	Domain
A, B, D [auth C], E [auth D]	IPR032419	NF-kappa-B essential modulator NEMO, CC2-LZ domain	Domain
A, B, D [auth C], E [auth D]	IPR051301	Optineurin/NF-kappa-B Essential Modulator	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth G], F [auth E]	Pharos: Q96EP0	prostate cancer Prostatic Neoplasms
A, B, D [auth C], E [auth D]	Pharos: Q96CV9	amyotrophic lateral sclerosis amyotrophic lateral sclerosis type 12 primary open angle glaucoma bone Paget disease glaucoma glaucoma, normal tension, susceptibility to neurodegenerative disease open-angle glaucoma lung cancer malignant glioma myopathy oligodendroglioma ovarian cancer acute myeloid leukemia psoriasis amyotrophic lateral sclerosis amyotrophic lateral sclerosis type 12 primary open angle glaucoma bone Paget disease glaucoma glaucoma, normal tension, susceptibility to neurodegenerative disease open-angle glaucoma lung cancer malignant glioma myopathy oligodendroglioma ovarian cancer acute myeloid leukemia psoriasis Amyotrophic Lateral Sclerosis With Dementia atypical teratoid rhabdoid tumor juvenile open angle glaucoma malignant colon neoplasm malignant mesothelioma glioblastoma large cell medulloblastoma malignant ependymoma medulloblastoma non-small cell lung carcinoma osteosarcoma primitive neuroectodermal tumor spina bifida astrocytic tumor ductal breast carcinoma in situ glaucoma 3A hydrophthalmos