9AZM | pdb_00009azm

In situ human ribosome (Focused on 40S with SERBP1 CTD)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth SD]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II) 8043545 3001043 SCOP2B (2022-06-29)
C [auth SF]SCOP2B SuperfamilyRibosomal protein S7 8066003 3000799 SCOP2B (2022-06-29)
D [auth SK]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055714 3000034 SCOP2B (2022-06-29)
F [auth SQ]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082685 3000100 SCOP2B (2022-06-29)
G [auth SS]SCOP2B SuperfamilyS13-like H2TH domain 8101555 3000053 SCOP2B (2022-06-29)
H [auth ST]SCOP2B SuperfamilyWinged helix DNA-binding domain 8089318 3000034 SCOP2B (2022-06-29)
I [auth SU]SCOP2B SuperfamilyRibosomal protein S10 8098806 3001336 SCOP2B (2022-06-29)
J [auth Sc]SCOP2B SuperfamilyNucleic acid-binding proteins 8063426 3000135 SCOP2B (2022-06-29)
K [auth Sd]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052572 3000068 SCOP2B (2022-06-29)
M [auth SM]SCOP2B SuperfamilyL30e-like 8063978 3001739 SCOP2B (2022-06-29)
N [auth SZ]SCOP2B SuperfamilyWinged helix DNA-binding domain 8090992 3000034 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth SD]PF07650KH domain (KH_2)KH domainDomain
B [auth SD]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
B [auth SD]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
C [auth SF]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
C [auth SF]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
D [auth SK]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Domain
E [auth SP]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
F [auth SQ]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
G [auth SS]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
H [auth ST]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
I [auth SU]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
M [auth SM]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
N [auth SZ]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth CD]Serbp1
B [auth SD]Small ribosomal subunit protein uS3
C [auth SF]40S ribosomal protein S5
D [auth SK]40S ribosomal protein S10
E [auth SP]Small ribosomal subunit protein uS19
F [auth SQ]Small ribosomal subunit protein uS9
G [auth SS]40S ribosomal protein S18
H [auth ST]40S ribosomal protein S19
I [auth SU]40S ribosomal protein S20
J [auth Sc]40S ribosomal protein S28
K [auth Sd]40S ribosomal protein S29
L [auth Sg]Receptor of activated protein C kinase 1
M [auth SM]Small ribosomal subunit protein eS12
N [auth SZ]Small ribosomal subunit protein eS25
O [auth Sf]Ubiquitin-40S ribosomal protein S27a
P [auth S2]18S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth CD]IPR039764RNA binding protein HABP4/SERBP1-likeFamily
A [auth CD]IPR006861Hyaluronan/mRNA-binding proteinDomain
A [auth CD]IPR032381Intracellular hyaluronan-binding protein 4, N-terminal domainDomain
B [auth SD]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
B [auth SD]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
B [auth SD]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
B [auth SD]IPR005703Small ribosomal subunit protein uS3, eukaryota/archaealFamily
B [auth SD]IPR004044K Homology domain, type 2Domain
B [auth SD]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
B [auth SD]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
C [auth SF]IPR023798Small ribosomal subunit protein uS7 domainDomain
C [auth SF]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
C [auth SF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
C [auth SF]IPR000235Small ribosomal subunit protein uS7Family
C [auth SF]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
D [auth SK]IPR037447Small ribosomal subunit protein eS10Family
D [auth SK]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
D [auth SK]IPR005326Plectin/eS10, N-terminalDomain
E [auth SP]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
E [auth SP]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
E [auth SP]IPR002222Small ribosomal subunit protein uS19Family
E [auth SP]IPR005713Small ribosomal subunit protein uS19, eukaryota/archaeaFamily
F [auth SQ]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
F [auth SQ]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
F [auth SQ]IPR000754Small ribosomal subunit protein uS9Family
F [auth SQ]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
G [auth SS]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
G [auth SS]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
G [auth SS]IPR001892Small ribosomal subunit protein uS13Family
G [auth SS]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
H [auth ST]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
H [auth ST]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
H [auth ST]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
H [auth ST]IPR001266Small ribosomal subunit protein eS19Family
I [auth SU]IPR027486Small ribosomal subunit protein uS10 domainDomain
I [auth SU]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
I [auth SU]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
I [auth SU]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
I [auth SU]IPR001848Small ribosomal subunit protein uS10Family
J [auth Sc]IPR028626Ribosomal protein eS28 conserved siteConserved Site
J [auth Sc]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth Sc]IPR000289Small ribosomal subunit protein eS28Family
K [auth Sd]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
K [auth Sd]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
K [auth Sd]IPR001209Small ribosomal subunit protein uS14Family
K [auth Sd]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
L [auth Sg]IPR019775WD40 repeat, conserved siteConserved Site
L [auth Sg]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
L [auth Sg]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
L [auth Sg]IPR045223Small ribosomal subunit protein RACK1-likeFamily
L [auth Sg]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
L [auth Sg]IPR001680WD40 repeatRepeat
M [auth SM]IPR000530Small ribosomal subunit protein eS12Family
M [auth SM]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
M [auth SM]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
M [auth SM]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
N [auth SZ]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
N [auth SZ]IPR004977Small ribosomal subunit protein eS25Family
O [auth Sf]IPR019954Ubiquitin conserved siteConserved Site
O [auth Sf]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
O [auth Sf]IPR050158Ubiquitin and ubiquitin-likeFamily
O [auth Sf]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
O [auth Sf]IPR000626Ubiquitin-like domainDomain
O [auth Sf]IPR002906Small ribosomal subunit protein eS31Domain
O [auth Sf]IPR019956Ubiquitin domainDomain
O [auth Sf]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth CD]PharosQ8NC51
B [auth SD]PharosP23396
C [auth SF]PharosP46782
D [auth SK]PharosP46783
E [auth SP]PharosP62841
F [auth SQ]PharosP62249
G [auth SS]PharosP62269
H [auth ST]PharosP39019
I [auth SU]PharosP60866
J [auth Sc]PharosP62857
K [auth Sd]PharosP62273
L [auth Sg]PharosP63244
M [auth SM]PharosP25398
N [auth SZ]PharosP62851
O [auth Sf]PharosP62979