Annotations: 9AU7

Human Retriever VPS35L/VPS29/VPS26C complex bound to SNX17 peptide (Composite Map)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Metallo-dependent phosphatases	8036532	3001067	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Reovirus_L2_GTase	e9au7C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Reovirus_L2_GTase	ECOD (v295.2)
B	Reovirus_L2_GTase	e9au7B1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Reovirus_L2_GTase	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF03643	Vacuolar protein sorting-associated protein 26 (Vps26)	Vacuolar protein sorting-associated protein 26	-	Family
B	PF12850	Calcineurin-like phosphoesterase superfamily domain (Metallophos_2)	Calcineurin-like phosphoesterase superfamily domain	Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D	Sorting nexin-17	ion binding binding anion binding phosphatidylinositol binding small molecule binding protein binding signaling receptor binding low-density lipoprotein particle receptor binding lipoprotein particle receptor binding	sterol catabolic process alcohol catabolic process catabolic process lipid catabolic process sterol metabolic process steroid metabolic process cholesterol metabolic process alcohol metabolic process primary metabolic process cholesterol catabolic process secondary alcohol metabolic process steroid catabolic process small molecule metabolic process metabolic process sterol catabolic process alcohol catabolic process catabolic process lipid catabolic process sterol metabolic process steroid metabolic process cholesterol metabolic process alcohol metabolic process primary metabolic process cholesterol catabolic process secondary alcohol metabolic process steroid catabolic process small molecule metabolic process metabolic process cellular process small molecule catabolic process lipid metabolic process regulation of localization import into cell regulation of biological process regulation of cellular component organization regulation of cellular process regulation of transport transport biological regulation establishment of localization cellular component organization localization cellular component organization or biogenesis endocytosis regulation of endocytosis cellular response to stimulus response to stimulus signaling signal transduction cell communication cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport vesicle-mediated transport endosomal transport localization within membrane endocytic recycling vesicle-mediated transport to the plasma membrane	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol protein-containing complex membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle membrane vesicle membrane cytoplasmic vesicle organelle cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol protein-containing complex membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle membrane vesicle membrane cytoplasmic vesicle organelle vesicle organelle membrane early endosome endosome endomembrane system Golgi apparatus endosome membrane bounding membrane of organelle
C	Vacuolar protein sorting-associated protein 26C	-	cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport localization within membrane vesicle-mediated transport cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport localization within membrane vesicle-mediated transport endocytic recycling endosomal transport vesicle-mediated transport to the plasma membrane	endosome membrane membrane-bounded organelle intracellular anatomical structure membrane endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle endosome membrane membrane-bounded organelle intracellular anatomical structure membrane endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle cytoplasm vesicle organelle membrane protein-containing complex nucleus organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane
B	Vacuolar protein sorting-associated protein 29	-	cellular localization transport intracellular transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process localization within membrane endocytic recycling vesicle-mediated transport to the plasma membrane	membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle protein-containing complex membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle protein-containing complex membrane membrane protein complex retromer complex retromer, cargo-selective complex cytosol endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane late endosome organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane
A	VPS35 endosomal protein-sorting factor-like	-	Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization cellular process Golgi vesicle transport intracellular transport endocytic recycling endosomal transport Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization cellular process Golgi vesicle transport intracellular transport endocytic recycling endosomal transport establishment of localization in cell	membrane-bounded organelle intracellular anatomical structure ficolin-1-rich granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle ficolin-1-rich granule endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane membrane-bounded organelle intracellular anatomical structure ficolin-1-rich granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle ficolin-1-rich granule endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane endosome membrane endosome cell periphery plasma membrane protein-containing complex organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D	IPR001683	Phox homology	Domain
D	IPR011993	PH-like domain superfamily	Homologous Superfamily
D	IPR037836	SNX17, atypical FERM-like domain	Domain
D	IPR048763	Sortin nexin 17/31, FERM domain, F1 lobe	Domain
D	IPR000159	Ras-associating domain	Domain
D	IPR028666	Sorting nexin-17, FERM domain, N-terminal subdomain	Domain
D	IPR040842	Sorting nexin-17/31, FERM domain	Domain
D	IPR036871	PX domain superfamily	Homologous Superfamily
D	IPR048767	Sortin nexin 17/31, FERM domain, F2 lobe	Domain
C	IPR014756	Immunoglobulin E-set	Homologous Superfamily
C	IPR014752	Arrestin-like, C-terminal domain superfamily	Homologous Superfamily
C	IPR028934	Vacuolar protein sorting protein 26 related	Family
B	IPR000979	Phosphodiesterase MJ0936/Vps29	Family
B	IPR024654	Calcineurin-like phosphoesterase domain, lpxH-type	Domain
B	IPR029052	Metallo-dependent phosphatase-like	Homologous Superfamily
B	IPR028661	Vacuolar protein sorting-associated protein 29	Family
A	IPR060266	VPS35 endosomal protein-sorting factor-like, N-terminal domain	Domain
A	IPR029705	VPS35 endosomal protein sorting factor-like	Family
A	IPR064019	VPS35L, C-terminal domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
D	: Q15036	Crohn disease ovarian cancer
C	: O14972	Down syndrome ovarian cancer
B	: Q9UBQ0	breast carcinoma ovarian cancer hereditary spastic paraplegia pancreatic ductal adenocarcinoma malignant pancreatic neoplasm
A	: Q7Z3J2	Alzheimer disease malignant mesothelioma tuberculosis large cell medulloblastoma osteosarcoma malignant colon neoplasm ovarian cancer