9ARG | pdb_00009arg

Rat GluN1-GluN2B NMDA receptor channel in apo conformation

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth C]SCOP2B SuperfamilyType 2 solute binding protein-like 8034027 3000083 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyType 2 solute binding protein-like 8034027 3000083 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B,
C [auth D]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
B,
C [auth D]		PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
B,
C [auth D]		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain
A,
D [auth C]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A,
D [auth C]		PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
A,
D [auth C]		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B,
C [auth D]		Glutamate receptor ionotropic, NMDA 2B
A,
D [auth C]		Glutamate receptor ionotropic, NMDA 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B,
C [auth D]		IPR018884Glutamate [NMDA] receptor, epsilon subunit, C-terminalDomain
B,
C [auth D]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
B,
C [auth D]		IPR001828Receptor, ligand binding regionDomain
B,
C [auth D]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
B,
C [auth D]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
B,
C [auth D]		IPR001508Ionotropic glutamate receptor, metazoaFamily
B,
C [auth D]		IPR015683Ionotropic glutamate receptorFamily
A,
D [auth C]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
A,
D [auth C]		IPR001828Receptor, ligand binding regionDomain
A,
D [auth C]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
A,
D [auth C]		IPR049873Glutamate [NMDA] receptor subunit 1-like, N-terminal LIVBP-like domainDomain
A,
D [auth C]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A,
D [auth C]		IPR001508Ionotropic glutamate receptor, metazoaFamily
A,
D [auth C]		IPR015683Ionotropic glutamate receptorFamily
A,
D [auth C]		IPR049872Glutamate [NMDA] receptor subunit 1-like, ligand-binding domainDomain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM