9A6Z | pdb_00009a6z

Integrative model of RPOB-DNLJ by crosslinking MS and deep learning

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	DNLJ_BACSU	ligase activity, forming phosphoric ester bonds catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity DNA ligase (NAD+) activity DNA ligase activity ligase activity DNA binding binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus response to stimulus cellular response to stress DNA damage response response to stress DNA repair	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
A	RPOB_BACSU	DNA binding binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups ribonucleoside binding nucleoside binding DNA binding binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups ribonucleoside binding nucleoside binding heterocyclic compound binding carbohydrate derivative binding small molecule binding	response to stimulus response to chemical response to antibiotic RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process response to stimulus response to chemical response to antibiotic RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex RNA polymerase complex DNA-directed RNA polymerase complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR041663	DisA/LigA, helix-hairpin-helix motif	Domain
B	IPR004149	Zinc-finger, NAD-dependent DNA ligase C4-type	Domain
B	IPR001679	NAD-dependent DNA ligase	Family
B	IPR010994	RuvA domain 2-like	Homologous Superfamily
B	IPR001357	BRCT domain	Domain
B	IPR018239	NAD-dependent DNA ligase, active site	Active Site
B	IPR013840	NAD-dependent DNA ligase, N-terminal	Domain
B	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
B	IPR013839	NAD-dependent DNA ligase, adenylation	Domain
B	IPR004150	NAD-dependent DNA ligase, OB-fold	Domain
B	IPR033136	NAD-dependent DNA ligase, conserved site	Conserved Site
B	IPR003583	Helix-hairpin-helix DNA-binding motif, class 1	Domain
B	IPR036420	BRCT domain superfamily	Homologous Superfamily
A	IPR007642	RNA polymerase Rpb2, domain 2	Domain
A	IPR015712	DNA-directed RNA polymerase, subunit 2	Family
A	IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Homologous Superfamily
A	IPR037034	RNA polymerase Rpb2, domain 2 superfamily	Homologous Superfamily
A	IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Domain
A	IPR007121	RNA polymerase, beta subunit, conserved site	Conserved Site
A	IPR007645	RNA polymerase Rpb2, domain 3	Domain
A	IPR014724	RNA polymerase Rpb2, OB-fold	Homologous Superfamily
A	IPR019462	DNA-directed RNA polymerase, beta subunit, external 1 domain	Domain
A	IPR010243	DNA-directed RNA polymerase beta subunit, bacterial-type	Family
A	IPR007644	RNA polymerase, beta subunit, protrusion	Domain
A	IPR007641	RNA polymerase Rpb2, domain 7	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.