9A04 | pdb_00009a04

Integrative model of 5' Nucleotide excision repair complex of XPA-DBD and RPA70AB

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D	DNA long arm	-	-	-
C	DNA short arm	-	-	-
B	Subunit B	protein binding binding protein domain specific binding DNA binding damaged DNA binding nucleic acid binding identical protein binding protein homodimerization activity protein dimerization activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding protein binding binding protein domain specific binding DNA binding damaged DNA binding nucleic acid binding identical protein binding protein homodimerization activity protein dimerization activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding	response to stimulus response to chemical response to toxic substance response to light stimulus response to radiation response to abiotic stimulus response to UV UV protection regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process response to stimulus response to chemical response to toxic substance response to light stimulus response to radiation response to abiotic stimulus response to UV UV protection regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription positive regulation of metabolic process regulation of DNA-templated transcription initiation regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process transcription initiation at RNA polymerase II promoter positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of biological process positive regulation of transcription initiation by RNA polymerase II biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression positive regulation of transcription by RNA polymerase II macromolecule biosynthetic process nucleic acid metabolic process DNA-templated transcription initiation positive regulation of DNA-templated transcription initiation positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of transcription initiation by RNA polymerase II cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process cellular response to stimulus signaling cell death intracellular signal transduction cell communication apoptotic signaling pathway cellular response to stress DNA damage response response to stress intrinsic apoptotic signaling pathway in response to DNA damage signal transduction apoptotic process intrinsic apoptotic signaling pathway programmed cell death DNA metabolic process nucleotide-excision repair involved in interstrand cross-link repair nucleotide-excision repair interstrand cross-link repair DNA repair base-excision repair nucleotide-excision repair, DNA damage recognition chromosome organization cellular component organization organelle organization cellular component organization or biogenesis cellular response to environmental stimulus cellular response to light stimulus cellular response to radiation UV-damage excision repair cellular response to abiotic stimulus cellular response to UV catabolic process autophagy regulation of catabolic process regulation of autophagy process utilizing autophagic mechanism response to oxidative stress developmental process multicellular organism growth multicellular organismal process developmental growth growth localization protein localization to organelle macromolecule localization protein localization to nucleus intracellular protein localization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex nuclear protein-containing complex nucleotide-excision repair factor 1 complex nucleotide-excision repair complex intracellular membraneless organelle nuclear body membraneless organelle
A	Subunit A	chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity chromatin binding binding DNA binding damaged DNA binding nucleic acid binding sequence-specific DNA binding G-rich strand telomeric DNA binding sequence-specific single stranded DNA binding single-stranded telomeric DNA binding single-stranded DNA binding telomeric DNA binding chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity chromatin binding binding DNA binding damaged DNA binding nucleic acid binding sequence-specific DNA binding G-rich strand telomeric DNA binding sequence-specific single stranded DNA binding single-stranded telomeric DNA binding single-stranded DNA binding telomeric DNA binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process nucleobase-containing compound metabolic process DNA replication metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process localization cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process nucleobase-containing compound metabolic process DNA replication metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process localization protein localization to chromosome protein localization to organelle macromolecule localization intracellular protein localization telomere maintenance via telomerase telomere organization chromosome organization nucleobase-containing compound biosynthetic process macromolecule biosynthetic process RNA-templated DNA biosynthetic process telomere maintenance via telomere lengthening telomere maintenance cellular component organization nucleic acid biosynthetic process organelle organization biosynthetic process cellular component organization or biogenesis DNA biosynthetic process multicellular organismal process multicellular organismal-level homeostasis homeostatic process homeostasis of number of cells within a tissue anatomical structure homeostasis tissue homeostasis homeostasis of number of cells mismatch repair DNA repair DNA-templated DNA replication protein localization to site of double-strand break developmental process cellular developmental process hemopoiesis cell differentiation anatomical structure development cell development DNA recombination multicellular organism development embryo development ending in birth or egg hatching chordate embryonic development embryo development in utero embryonic development regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation regulation of cell population proliferation biological regulation positive regulation of biological process positive regulation of cellular process double-strand break repair recombinational repair double-strand break repair via homologous recombination base-excision repair nucleotide-excision repair sexual reproduction reproductive process meiotic cell cycle cell cycle	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle cellular anatomical structure nuclear replisome membraneless organelle replication fork membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle cellular anatomical structure nuclear replisome membraneless organelle replication fork DNA replication factor A complex protein-DNA complex nuclear replication fork intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle nuclear lumen replisome nucleoplasm condensed nuclear chromosome lateral element synaptonemal structure synaptonemal complex condensed chromosome male germ cell nucleus germ cell nucleus site of double-strand break site of DNA damage chromosome, telomeric region chromosomal region nuclear body PML body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR009061	Putative DNA-binding domain superfamily	Homologous Superfamily
B	IPR022656	XPA, C-terminal	Domain
B	IPR022652	Zinc finger, XPA-type, conserved site	Conserved Site
B	IPR000465	XPA/RAD14	Family
B	IPR037129	XPA domain superfamily	Homologous Superfamily
B	IPR022658	XPA, conserved site	Conserved Site
A	IPR007199	Replication factor-A protein 1, N-terminal	Domain
A	IPR047192	Replication factor A, C-terminal, eukaryotes	Domain
A	IPR013955	Replication factor A, C-terminal	Domain
A	IPR031657	Replication protein A, OB domain	Domain
A	IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	Domain
A	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A	IPR004591	Replication factor A protein 1	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: P23025	xeroderma pigmentosum skin basal cell carcinoma skin neoplasm xeroderma pigmentosum group A intestinal cancer liver cancer Micronuclei, Chromosome-Defective skin cancer thyroid gland carcinoma Cockayne syndrome hyperthyroidism melanoma ovarian cancer skin pigmented basal cell carcinoma trichothiodystrophy xeroderma pigmentosum skin basal cell carcinoma skin neoplasm xeroderma pigmentosum group A intestinal cancer liver cancer Micronuclei, Chromosome-Defective skin cancer thyroid gland carcinoma Cockayne syndrome hyperthyroidism melanoma ovarian cancer skin pigmented basal cell carcinoma trichothiodystrophy cutaneous melanoma hypothyroidism intestinal neoplasm liver neoplasm pancreatic intraductal papillary-mucinous neoplasm squamous cell carcinoma Hashimoto thyroiditis intellectual disability malignant mesothelioma osteosarcoma progressive supranuclear palsy
A	Pharos: P27694	Chloracne astrocytic tumor breast cancer glioblastoma malignant ependymoma ovarian cancer atypical teratoid rhabdoid tumor Hodgkins lymphoma malignant mesothelioma psoriasis B-cell chronic lymphocytic leukemia dermatomyositis lymphoplasmacytic lymphoma medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.