8YP6 | pdb_00008yp6

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I [auth j]	SCOP2B Superfamily	Ribosomal protein S10	8096980	3001336	SCOP2B (2022-06-29)
H [auth i]	SCOP2B Superfamily	Ribosomal protein S5 domain 2-like	8082671	3000100	SCOP2B (2022-06-29)
G [auth h]	SCOP2B Superfamily	Ribosomal protein S8	8079055	3000709	SCOP2B (2022-06-29)
F [auth g]	SCOP2B Superfamily	Ribosomal protein S7	8077977	3000799	SCOP2B (2022-06-29)
E [auth f]	SCOP2B Superfamily	Ribosomal protein S6	8066503	3001323	SCOP2B (2022-06-29)
C [auth d]	SCOP2B Superfamily	Alpha-L RNA-binding motif	8083402	3001473	SCOP2B (2022-06-29)
T [auth m]	SCOP2B Superfamily	S13-like H2TH domain	8096982	3000053	SCOP2B (2022-06-29)
S [auth A]	SCOP2B Superfamily	Creatinase/aminopeptidase catalytic domain-like	8074143	3000126	SCOP2B (2022-06-29)
R [auth s]	SCOP2B Superfamily	Ribosomal protein S19	8086054	3000686	SCOP2B (2022-06-29)
O [auth q]	SCOP2B Superfamily	Nucleic acid-binding proteins	8059280	3000135	SCOP2B (2022-06-29)
M [auth o]	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8072635	3001284	SCOP2B (2022-06-29)
L [auth n]	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8059256	3000068	SCOP2B (2022-06-29)
K [auth l]	SCOP2B Superfamily	Nucleic acid-binding proteins	8096978	3000135	SCOP2B (2022-06-29)
J [auth k]	SCOP2B Superfamily	Translational machinery components	8096984	3000571	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
S [auth A]	PF00557	Metallopeptidase family M24 (Peptidase_M24)	Metallopeptidase family M24	This family contains metallopeptidases. It also contains non-peptidase homologues such as the N terminal domain of Spt16 which is a histone H3-H4 binding module [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth j]	Small ribosomal subunit protein uS10	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
H [auth i]	Small ribosomal subunit protein uS9	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
G [auth h]	Small ribosomal subunit protein uS8	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
F [auth g]	30S ribosomal protein S7	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
E [auth f]	Small ribosomal subunit protein bS6	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
D [auth e]	Small ribosomal subunit protein uS5	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
C [auth d]	Small ribosomal subunit protein uS4	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
T [auth m]	Small ribosomal subunit protein uS13	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome
B [auth c]	Small ribosomal subunit protein uS3	RNA binding binding nucleic acid binding mRNA binding rRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
S [auth A]	Methionine aminopeptidase	cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding peptidase activity catalytic activity, acting on a protein initiator methionyl aminopeptidase activity aminopeptidase activity hydrolase activity exopeptidase activity catalytic activity cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding peptidase activity catalytic activity, acting on a protein initiator methionyl aminopeptidase activity aminopeptidase activity hydrolase activity exopeptidase activity catalytic activity metallopeptidase activity metalloaminopeptidase activity metalloexopeptidase activity iron ion binding	primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
R [auth s]	Small ribosomal subunit protein uS19	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
Q [auth t]	Small ribosomal subunit protein bS20	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome
P [auth r]	Small ribosomal subunit protein bS18B	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
O [auth q]	Small ribosomal subunit protein uS17	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
N [auth p]	Small ribosomal subunit protein bS16	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
M [auth o]	Small ribosomal subunit protein uS15	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
L [auth n]	Small ribosomal subunit protein uS14B	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome RNA binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
K [auth l]	Small ribosomal subunit protein uS12	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
J [auth k]	Small ribosomal subunit protein uS11	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
A [auth a]	16S rRNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth j]	IPR001848	Small ribosomal subunit protein uS10	Family
I [auth j]	IPR027486	Small ribosomal subunit protein uS10 domain	Domain
I [auth j]	IPR036838	Small ribosomal subunit protein uS10 domain superfamily	Homologous Superfamily
I [auth j]	IPR018268	Small ribosomal subunit protein uS10, conserved site	Conserved Site
H [auth i]	IPR020574	Small ribosomal subunit protein uS9, conserved site	Conserved Site
H [auth i]	IPR023035	Small ribosomal subunit protein uS9, bacteria/plastid	Family
H [auth i]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
H [auth i]	IPR000754	Small ribosomal subunit protein uS9	Family
H [auth i]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
G [auth h]	IPR000630	Small ribosomal subunit protein uS8	Family
G [auth h]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
G [auth h]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
F [auth g]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
F [auth g]	IPR000235	Small ribosomal subunit protein uS7	Family
F [auth g]	IPR005717	Small ribosomal subunit protein uS7, bacteria/organella	Family
F [auth g]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
F [auth g]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
E [auth f]	IPR020815	Small ribosomal subunit protein bS6, conserved site	Conserved Site
E [auth f]	IPR000529	Small ribosomal subunit protein bS6	Family
E [auth f]	IPR020814	Small ribosomal subunit protein bS6, plastid/chloroplast	Family
E [auth f]	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
E [auth f]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
D [auth e]	IPR005712	Small ribosomal subunit protein uS5, bacteria	Family
D [auth e]	IPR000851	Small ribosomal subunit protein uS5	Family
D [auth e]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
D [auth e]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
D [auth e]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
D [auth e]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
D [auth e]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
C [auth d]	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
C [auth d]	IPR002942	RNA-binding S4 domain	Domain
C [auth d]	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
C [auth d]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
C [auth d]	IPR022801	Small ribosomal subunit protein uS4	Family
C [auth d]	IPR005709	Small ribosomal subunit protein uS4, bacteria	Family
T [auth m]	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
T [auth m]	IPR001892	Small ribosomal subunit protein uS13	Family
T [auth m]	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
T [auth m]	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
T [auth m]	IPR019980	Small ribosomal subunit protein uS13, bacteria	Family
B [auth c]	IPR005704	Small ribosomal subunit protein uS3, bacteria	Family
B [auth c]	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
B [auth c]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
B [auth c]	IPR004087	K Homology domain	Domain
B [auth c]	IPR004044	K Homology domain, type 2	Domain
B [auth c]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
B [auth c]	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
B [auth c]	IPR018280	Small ribosomal subunit protein uS3, conserved site	Conserved Site
S [auth A]	IPR001714	Peptidase M24, methionine aminopeptidase	Family
S [auth A]	IPR002467	Peptidase M24A, methionine aminopeptidase, subfamily 1	Family
S [auth A]	IPR036005	Creatinase/aminopeptidase-like	Homologous Superfamily
S [auth A]	IPR000994	Peptidase M24	Domain
R [auth s]	IPR005732	Small ribosomal subunit protein uS19, bacteria	Family
R [auth s]	IPR002222	Small ribosomal subunit protein uS19	Family
R [auth s]	IPR023575	Small ribosomal subunit protein uS19, superfamily	Homologous Superfamily
R [auth s]	IPR020934	Small ribosomal subunit protein uS19, conserved site	Conserved Site
Q [auth t]	IPR036510	Small ribosomal subunit protein bS20 superfamily	Homologous Superfamily
Q [auth t]	IPR002583	Small ribosomal subunit protein bS20	Family
P [auth r]	IPR001648	Small ribosomal subunit protein bS18	Family
P [auth r]	IPR018275	Small ribosomal subunit protein bS18, conserved site	Conserved Site
P [auth r]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
O [auth q]	IPR019984	Small ribosomal subunit protein uS17, bacteria/chloroplast	Family
O [auth q]	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
O [auth q]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
O [auth q]	IPR000266	Small ribosomal subunit protein uS17	Family
N [auth p]	IPR023803	Small ribosomal subunit protein bS16 domain superfamily	Homologous Superfamily
N [auth p]	IPR000307	Small ribosomal subunit protein bS16	Family
N [auth p]	IPR020592	Small ribosomal subunit protein bS16, conserved site	Conserved Site
M [auth o]	IPR005290	Small ribosomal subunit protein uS15, bacteria	Family
M [auth o]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
M [auth o]	IPR000589	Small ribosomal subunit protein uS15	Family
L [auth n]	IPR023053	Small ribosomal subunit protein uS14, bacteria	Family
L [auth n]	IPR001209	Small ribosomal subunit protein uS14	Family
L [auth n]	IPR018271	Small ribosomal subunit protein uS14, conserved site	Conserved Site
L [auth n]	IPR043140	Small ribosomal subunit protein uS14 superfamily	Homologous Superfamily
K [auth l]	IPR006032	Small ribosomal subunit protein uS12	Family
K [auth l]	IPR005679	Ribosomal protein uS12, bacteria	Family
K [auth l]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
J [auth k]	IPR001971	Small ribosomal subunit protein uS11	Family
J [auth k]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
J [auth k]	IPR019981	Small ribosomal subunit protein uS11, bacteria	Family
J [auth k]	IPR018102	Small ribosomal subunit protein uS11, conserved site	Conserved Site