8XCI | pdb_00008xci

Open state of central tail fiber of bacteriophage lambda upon binding to LamB

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth F], B [auth J], C [auth Z]	PF12421	Tip attachment protein J, C-terminal receptor binding domain (Ig_GpJ_C)	Tip attachment protein J, C-terminal receptor binding domain	This entry represents the C-terminal receptor binding domain of Tip attachment protein J from Escherichia phage lambda (GpJ) and similar bacterial and viral proteins. J attaches the virion to the host receptor LamB, inducing viral DNA ejection. This ...	This entry represents the C-terminal receptor binding domain of Tip attachment protein J from Escherichia phage lambda (GpJ) and similar bacterial and viral proteins. J attaches the virion to the host receptor LamB, inducing viral DNA ejection. This domain, which determines the host specificity of the phage, shows an immunoglobulin-like fold [1,2]. Many of the proteins in this entry are annotated as fibronectin type III. This domain was previously known as DUF3672 and is normally found associated with Pfam:PF09327 and Pfam:PF13550.	Domain
A [auth F], B [auth J], C [auth Z]	PF09327	Bacteriophage tail tip fiber protein (Phage_Tail_Tip)	Bacteriophage tail tip fiber protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth F], B [auth J], C [auth Z]	Tip attachment protein J	-	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly symbiont genome ejection through host cell envelope symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly symbiont genome ejection through host cell envelope symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell symbiont entry into host entry receptor-mediated virion attachment to host cell	virus tail virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth F], B [auth J], C [auth Z]	IPR055383	Tip attachment protein J, Fn3-1 domain	Domain
A [auth F], B [auth J], C [auth Z]	IPR053171	Viral Tip Attachment Protein	Family
A [auth F], B [auth J], C [auth Z]	IPR003961	Fibronectin type III	Domain
A [auth F], B [auth J], C [auth Z]	IPR021034	Tip attachment protein J, C-terminal receptor binding domain	Domain
A [auth F], B [auth J], C [auth Z]	IPR055385	Tip attachment protein J, HDII-ins2 domain	Domain
A [auth F], B [auth J], C [auth Z]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth F], B [auth J], C [auth Z]	IPR015406	Tip attachment protein J, central straight fiber domain	Domain
A [auth F], B [auth J], C [auth Z]	IPR032876	Tip attachment protein J	Domain
A [auth F], B [auth J], C [auth Z]	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.